Chr:
Chr2
Start:
32654037
End:
32654441
Strand:
-
Ref_name:
OSA-LNCN3348
Sequence
(OSA-LNCN3348.1):
GUCUAUUUGCGAAAUAAGUUUUUCAAAAGGACCAAAAUGUGAAAAAUCCAGGCGAGUGAUGACGAUGAAGCUUGAGCAGGUGGCAACAAUGAUGAGGGAGAGGGAACAGUCGUACUGCUGCUCUUUGUGAGGGGGUAAAGGAGAAUGGAGAAAUAAGAAGACAAAGGGAGGGCAUACUGGUAAGUUUCAAUAUUUGAGUGGAUGCAAAGGUUGAUUUGAGUGGUUUCCCUAUUUCAACAUUUAAGUGACACUAUCAAUUUCCCCAGAUGAAAAACUACUGGUUCAACAUGAAUAAACACAAUAUUUUUGUGCAGAAAACUGAAAUAGAAGCUGAACUAACCUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.96%
ME_num:
MEP:
34.96%
HE_num:
HEP:
4.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.87
Avg Expression:
6.41
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.63600348819516 | 0.00211952666883142 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.24709104223992 | 0.011250487468404 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.18090585165403 | 2.04378328046643e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.89566158575488 | 0.000229063890618625 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.38077177129663 | 0.000234529115908818 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.41654442746654 | 0.00137862806094238 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.57000196598241 | 0.00125217703081807 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.71793049621788 | 0.000147965795837363 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.85692793713025 | 0.000551478422335404 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.75177542919853 | 5.58307920772225e-05 |