Chr:
Chr2
Start:
32566478
End:
32572863
Strand:
-
Ref_name:
OSA-LNCN3344
Sequence
(OSA-LNCN3344.1):
GCAGCCAGUGAGUCAAGCCUGUGUGUUUACUACUGUGGCCACCGACGAGAGAGUGAGGCAGUGAGACGGGUGGAGACGAGCGGUGGACGCCGCGCGCCGCGGCCGGGGAGCAACGGGCGUUACGGCGCACAUGGCGCGCCCCGGUGGAGGACAAGCCGGACGCAGCAGAGGCCGCUUUUCCCCCCGUUGCACAGCUGGGAUAGAUGGGCAAGUGUGAGCUCCCGUCGACGGUCUGAACCGAAGCAACAGUAGCGAAAGACUGAAGAAGAGCAGCGGCAGCAGCCAUCUCGGGAUGCGAGGAUUUAUGAAAGAAAAUCGAACGCCGGACAGAGGAAGGAGGGAAAAGAGGCAGAGAUGUUGGAAUCUUUGCUUUUCUUUUCCAGUUUUCCUCCCUUUCUUUACCUGUGGUGCUGUGCCCGCUGCUUGACUCCUGCUGCAUGUUUGCUGCGGCGUAGAAACAGAUUACUGUAGUAGCUGUACCUCUUUCUUUUUGCAGCUUUGGCUAAUGGUGGGGGAUAUCUUUGUUUAGUCCAUGUAACUACGCUGGAGUAUGGAGUAUUACUAUAUGAUUAACCUAAAUCACUACUAUUAUAGACUGAUUUGUACUAGCCAUUGGUUGGCCAUGUGAGUGACCCACUAUGGCUUGUCUCGAGGGCCUUGUUGCCUGGUUUGACUCUUCCUCCUCCAUCGUCUGGUGGAUUUAUACCGGAAAUGGUGCUUUGCUUUGAAGCCAAUUCGACCGGCAUUAGAGUUUCAAACCCAUGAUAGCGUUGUGCCCUCGUCUCGUCUCGUGCUUUGCAAUUGUUUCGCUUUCAGGCUACGCUUUUGUGAACGUCCGUGAGUUUGUUAAAAAUCAGUUAGUAGUAGGUUGGUUUGAAAUCCGUCGUUGGGAUUUCUGCGUACUUCUCCUUUACAAGGAGAAAUUUCGUGCCAAACUGCUCUGGAAAGAUCCACAUAGUAACGUCCCUUUUUACAGUAGUAUUUCCUGAUCAGGCCCACUCACAAAGUUGACAGGCCGUUGAUCCCAACUUCUCACGACAAUCACCAGAUCACCACUAGUGUUUGUGACCAGCUAAUCUAAAAUGUCGCGUUGACACGCACUUGCGACGUACGACGCUGAUCUAACUAGAAAAGGCUCGCGUUGCCACCGGCUCCCCACCCGACCACGGCACACGUUGUCUCGAGGCCUUUCGGCAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
39.84%
ME_num:
MEP:
52.03%
HE_num:
HEP:
7.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.82
Avg Expression:
7.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.33979401650054 | 0.005866699359703 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.62255837911559 | 0.00098763596372628 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.30467485815296 | 0.00269549719941202 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.60887762209413 | 0.00275787813565945 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.34940960598021 | 0.00186662950146068 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.86661862788099 | 0.0366565311729907 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.72196499160399 | 0.000774393199184479 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.32320236541518 | 0.00137053266015501 |