Chr:
Chr2
Start:
32043946
End:
32044484
Strand:
-
Ref_name:
OSA-LNCN3336
Sequence
(OSA-LNCN3336.1):
UGAAGAAAAAUCGAAAUGAACAAAAUACUGAAGGGCAAAUACAAGUAAUCAAACGUAGUUGAGUACACCCCCAGGCAAGAAUUCAAAUUCCAUCCUUCUUCUCAAACCAAUCAGAGAACCAAAUGUGGCUUAACUACAUUUGACAAGUAUUAGGACAUGAAACAAAGUAUAGCUUAAUUAAGAAAAAGAAAAUAAGCAAUUAGAGAACCAAAUGUGGCUUAACUACAUUUGCCAAGUAUUAGGACAUGCGGAAUGAAAUAAAAUAGUAUAGCUUAAGGAAGAGAAAAAAAAAGCAUUUAUCAAAUGUGUAUUAAGUAUACAUGUAUCUUUUUUAAAAAAAGGCCAUAGCUCGGUCUCAAACAAUACCCAGAAAAACACGACACACAAUUUGUAUCCAUGUAUACAAAAUAAAGUUUAAUAAUAAUAUAAAUGGAUUAUCUUGCCUGUUGAUAAUAUGAUAAUACAUCUAAGGAUUAAAGUCACCAAUCACAUCCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
37.2%
ME_num:
MEP:
57.93%
HE_num:
HEP:
4.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.80
Avg Expression:
5.21
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.48849845977777 | 0.0041710073103522 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.88560562429844 | 0.0364856861457025 |
3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.5771911712814 | 0.048848678809303 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.59859768360884 | 0.0185362449209411 |