Chr:
Chr2
Start:
31580156
End:
31582052
Strand:
+
Ref_name:
OSA-LNCN3327
Sequence
(OSA-LNCN3327.1):
GGCGGGAGGAGGCGGUCGCCGGCGACGCCUGCCGGUGACAACGACAAUGCGGACCCGACGACGACGACGGUGAGCGCGGCGUCGGCGGGAGGAGGCGGCGGCGCCUACAGCCGGCGGGAGGAGGCGGAAGGCGGCGGCUGGCGGGAGUAGGCGGCCGCCGGCGGGAGGAGUGGCGUUUGGUGGACGGCGACUCCCUGGUAAUCUUACAAGUUACAGCAAUUGAUUACUAGUAUAUAUUUUUCACAUCAGACCGUCUUCUGAUUAAAAUAUAUUGAUUGUACCUGGAGUCUGAAAGAGAACAUUAGCAAUCUAGCCGAUAGAUAUAAAAUUCAGUUAAGAAAUGGAUGCAGAUUCCCCAUUAGCUGCUCACAAAGAGAGAGAUCCCAUGUACUUUGGCGGGCAAGUGGUUGCAUUUUGUAUUAUGAUGUGUCGCUGUAACACACCCAAAAGUGAGGAGAAAUGAGGCUUGUGGGGGCCAUUGCUGACGACACGAAUUAUGGGCGGCACUUAACACUUCACAGUUCACAGGAGUACUGUCAAUUAAUCGGCAUAUUUCUUGUUUCUUUUCUCUGAAAAAGGUCACCGUUGGUGCAGAGUAUUGUUUCACACACAGUUUGAUUUUAUGGAGUAACCAAUUCCAAGUGGAAAAGUAGUGUAGUAUAGAUAAUUAGCACAACUGUGAACCAUUUGUGUCUACAUUCCAUUGGUUCUUUUGCCCUUUCUUCAUGCUCAGGAGGCAUAAUGAAAAGUAUGCUAGAGGAGCUAGAGUAAAGGUCUCGCUCCAAUUGGUAUAUGUAUUUUUUCAGUCAGUAUCAAUUAUAAUAGCCAGGAGACAGUUCUAUGUCCUAUUAAUAAACAGGAUGCAUAUAUAUGAGCAUAUCGGUUUCUAAUUUUUGAAAUAGUAUAAAUGCAUAAUAGGGAAAUGACUGUACCUGCUUAUAGAGUAGUGGAGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.65%
ME_num:
MEP:
6.1%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.99
Avg Expression:
5.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.06012639037994 | 0.00527804391932649 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.30569542317382 | 0.00249754819726302 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.57292086443788 | 0.0144651428678075 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.76380314367569 | 0.0386573223671767 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.40809077195583 | 0.00183881798605168 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.11529467927964 | 0.00301858367613263 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.58920387125846 | 0.00122752675103545 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.01891430628767 | 0.00566923264412216 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.74015731165844 | 0.00386454422962806 |