Chr:
Chr2
Start:
31578629
End:
31579912
Strand:
+
Ref_name:
OSA-LNCN3326
Sequence
(OSA-LNCN3326.1):
GCGUGACACCGCUCGAUACAGUAUAUCCAUAUCCCUAUCCAUCCAUCAGCAGCAGCAGACGAAGAUGGGCGCGACACCAUGUCUUGGGAAUCCGACGAACGAGCAGGAGUAGCAGUUUAUUGCGACGCGAAGCAGGCCUAUAAAAAGGCUCAUUCACAUCAAUGGAGUAGUAUACACUUGCAGCUUCUUCUGCCUGACAAAGCACACGGUUCACAGCUUCUUCCGCCUGACAUUCUGACGCUUUACAGCUCCUUGUUGUAUACGUUGAGUGGCGCGUCCUCCGAAUGGGUACUACCAGGAGGUACUACGAGGAGUAUGAUGUUCGAUCUUCUCGGUUACGGGACGAAUUGUCUGUGUCAAAUCAGAAGUAUGCAGAAAGUACAUCGCUUUGUGUUAUGGCAUUGGAGCGUACAGUUUGGUACUCCAUGGCUUUCGUGACAGCUGGCCUCCUGCGCAAGCCGCCUGUCUCCCCACAGUCACAUGCCGCGCUGCCUACUUCACCAUCUCCUGCGGUGGACGAGGAAACAUCACAUUCUUUAGGUGGUGUUUGGAAAAGAGGGACUAAGGGUGUGUUUGGAUGGAGGGAUAUGGGUGGAUAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.5%
ME_num:
MEP:
5.69%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
1.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.13502438399877 | 0.00482606544860569 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.37862002148785 | 0.0383668264669597 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.3862939463283 | 0.00216961316494914 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.37003995493725 | 0.0355170374486074 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.62678536251811 | 0.0139417970759459 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.79492133894547 | 0.0105413550417633 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.54316808878109 | 0.00746369869690296 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.20147196820224 | 0.00258468330211647 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.67908907427064 | 0.00100526594196665 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.09040568423233 | 0.00519945679835219 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.8665131006798 | 0.00285414330098572 |