Chr:
Chr2
Start:
31457452
End:
31460201
Strand:
+
Ref_name:
OSA-LNCN3324
Sequence
(OSA-LNCN3324.1):
UCUCUGUCUUCCAGCGAAUUGCAUGCAUGGCUAAAAUGAUUACAGCAGACGUUUUGCCAUCACGAGUUCACGACAUAUGAUUACUCCCACUCCCACUCCCACAACCAUCUCUCUGCGCCAGCGCUAUCACGUAGCCAACGCCGCUGCAUGGCAAAAGUUGAUUGCUCCCUGUGCCUGACAAUGAGAUGGGCAAAGAGGUUUCAGGUAAUACCAUUGUAUAAGCUAUUUUGUCUUAAAAUACGGCAUGGCAAUCAAUUUCCUCAUGGUGAUUAUCUAUAAAAUGUUAUCUUUUUUUUGGGGGGGGGGGGGGGGGCAAUCUUGUUGUGGGAAUUUGUCAAUAGUAAUUUCCAAACAAUAUUAACACGCAUUUGUUUAAGAGCAAUUUCGUCAUAAUGUUCACAUAAUUGUCAAGCAAAAUUUUCAAGAGUACAUUGAUACUCAUUUUUCUUCCGAUUAUCAAUGUAUAAAUGUGGACAAUCAAUACUAUUUCUGCUACAUCACAUGAGGAAUUGGGCUAGUGGAGUAGAAUCGGUAGAACCAUGAUGACGAUAGAAUAAGGGGAUAAAAUGACAUGUACAUUAGCAUUUACUGGAACUUUCACAGUUUCACUCGUCGAUGGCAUGCAAAAUGCAAAUUAGACAAUUGCCAAGGGGAAUUUUUUGAUGUAAAAGAGGCCCUUUUGCUCUCCAAGGAGUCAUUAUAAUGUUUACCCGGGGCUUGGAACGCUCAAACUAUCUUGAUCUCUUCUGAAAAUCCUGCGUGACGAACUUAAAAUUCUUACUGGUAGUUACUUGAAUGUAGCACAUGUUCCUAGAUCGUCAGUUGCUUUGGCACAUGGUACCUGGUCGAUCGUGGGCCAAAACUCAGGAAAAGAAGC
Sequence
(OSA-LNCN3324.2):
CAGCGAAUUGCAUGCAUGGCUAAAAUGAUUACAGCAGACGUUUUGCCAUCACGAGUUCACGACAUAUGAUUACUCCCACUCCCACUCCCACAACCAUCUCUCUGCGCCAGCGCUAUCACGUAGCCAACGCCGCUGCAUGGCAAAAGUUGAUUGCUCCCUGUGCCUGACAAUGAGAUGGGCAAAGAGAAUGCAGGGAGGAGCUCGUCGGCCAUGCUGUGCGGGGGCCGUGGGUGGGGGGGGGAGGUGUUGCCACUUUUGCCAGCUAGUUGUUCUCGUGGGGAGGAGCUCACCAGCCGCGACAUGCACAAGGGGGAGGGGGUCCCCAGCCAGUCGAGUGCGCGGGGGGAGGGGUCGACAACCAUGGCGAGUCCAGGGGAGGGGUUGCCGGUUGCAGCGCGUGCAAGAGGAGGGGUCACCGGCCGCGCCGCGCACGUGGGAAGGAGCUCACUGGCCUCAUGAAAGGUGGAAAGUCAUACAUGUUUUUUCCAUGUUUCACUGACAUGUAGGGCCCACUGUAAUAUGGUUUUUCAUAUCUCACAGACAUGUGGGCCCUACAUGCAAAAACCACUUUUCAAACCAUAGAAGGAGUUUAUUUGCACCGGUUUUAGAAGAUAGGGGAUGCGUUACACCGGGUUUUGUGGUCGAGGGAUGUGCUUCAAUCAAGAGCAAGAGAUUAGGGAGUAGUAAUAAACUUAUUCCUUUGUGCCGUGUGUUGCACACACCGCACAACAGCUGACCUAAAUAAAAGGCUUUAUGGGCCAGCCAUUUUAGCGUCGAAUAGGCCCAAAUAUCGGUCAUGGGCCCAACAAAAGCAGACCCCCAAGAAACUUACAGAAAAACCUUCUCCUGUUGCCUUUCAAUCAUUCCCCAAUCAAAAAAAGGGUAAGUUUACCAUCCUUUAUAAAGUAGAAAAUAUGGUACCUCUAGUACUAAUACUAUGUAUCUUAAGGUAUAAGGUAUAAAAAAUUUUAGUAUAAAAUUUAGGUACCUCAAGAUACUUUCUCAAGGAUUGUAAAAUUCCUCGUCGAAAAAACAUUAUACAUGCAGCAGGAGUCAUCUCCUUUGUGUUCAGAUUUUCCAUUGAAAAAAAAAUCACGAAUAUUAGGGAUGGACCUAAUAUCAAAUAAUUAGGAGUGAGGUUUCGAACCCAGGUUGUCUAGCCCAUCACCUUGUGGAGCUAGCCGGAAAGCGGAAAACCCUUAGACGUUUCUCGUUUAAAUUUUCCAUUGACGAGCGAUUAAAUUUACGUUUUUUUGCGGGUAAUUAAAUUUACGUUUUGCCAUAUGCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.28%
ME_num:
MEP:
6.5%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.03432687370326 | 0.0342411096887898 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.88601605459097 | 0.0143457749812666 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.83587648956376 | 0.00114126985262695 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 7.35924366882643 | 0.00407899433133845 |