Chr:
Chr2
Start:
31205375
End:
31206209
Strand:
-
Ref_name:
OSA-LNCN3319
Sequence
(OSA-LNCN3319.1):
CAUUCAGCGAGCAUUUGAGCUUCUUCAGACAUUGCCCGGUGAAUGAGAGAGAGCUUGUCUUCCUACUAGGUCGACUCUUCCCGUACGUGCUGGACUUCUACUGCUGCUGGUGGUCUGCAGCAAUGGAGCUAGUACGGCAUCCACCGAUGAUUCCUAGGCCGCAGUGGUACGUACGCUCAUCUCAGGUCUUGCAUGUGGAGACGAGGUGUAUUGCUGGUUGUGUAGCCAAGGAUGACUUGCCGGCCUGGUUUGUGUUCAUCAGCAAUCCAGCAUAUGCUGUAUUGCCGUGUGUGAUCGAUCGAUGCAUGGACCGGCAAGUUAUUUUCUUUGGCUACAUUACAACCUCGUCUUCUCAUGCUAGACCUCAAGAUGAUACACAUGCAUGAGUGCAGGAUCAGAUGCAGCGAUAGGAUAUGAUGUCGGUGCUGAUCGAGGGCACUACUUGUUCGGUGAUCUCUCUCUUAAUUUCUCGUACACUAGCUAGCUAAGCUAGUUCUUCCAUAGUUCCAUGUCUGGUUCAAUGCAAUUGCACUUUCAUUCUUUGAGGGGAGGGGGUUGUCGAUCGAGAAGGACUGAUCGAUUGCAGAUUUCUAACUUGUGUCCUAUGCUUCACGUACGUCGCCGAUCUUCGUAUCACAAAUGUUUAGAUUGCUGCAUUGUCCAUUUCGUGUCUAGCACAUAGUAUUAGUUCAGUUUUGAACCGAUUAUUAAGUAACUUUUGCAUAGUGUACACAACUAAAAAAAGGGGUACAAUAAUAUGCAUGAACUAACUACAUAAACUACACUGAACUAGGACGAUAGAAAUACAAGACUAAUUACUACUCCACUCGGUCCC
Sequence
(OSA-LNCN3319.2):
CAUUCAGCGAGCAUUUGAGCUUCUUCAGACAUUGCCCGGUGAAUGAGAGAGAGCUUGUCUUCCUACUAGGUCGACUCUUCCCGUACGUGCUGGACUUCUACUGCUGCUGGUGGUCUGCAGCAAUGGAGCUAGUACGGCAUCCACCGAUGAUUCCUAGGCCGCAGUGACCUCAAGAUGAUACACAUGCAUGAGUGCAGGAUCAGAUGCAGCGAUAGGAUAUGAUGUCGGUGCUGAUCGAGGGCACUACUUGUUCGGUGAUCUCUCUCUUAAUUUCUCGUACACUAGCUAGCUAAGCUAGUUCUUCCAUAGUUCCAUGUCUGGUUCAAUGCAAUUGCACUUUCAUUCUUUGAGGGGAGGGGGUUGUCGAUCGAGAAGGACUGAUCGAUUGCAGAUUUCUAACUUGUGUCCUAUGCUUCACGUACGUCGCCGAUCUUCGUAUCACAAAUGUUUAGAUUGCUGCAUUGUCCAUUUCGUGUCUAGCACAUAGUAUUAGUUCAGUUUUGAACCGAUUAUUAAGUAACUUUUGCAUAGUGUACACAACUAAAAAAAGGGGUACAAUAAUAUGCAUGAACUAACUACAUAAACUACACUGAACUAGGACGAUAGAAAUACAAGACUAAUUACUACUCCACUCGGUCCC
Sequence
(OSA-LNCN3319.3):
CAUUCAGCGAGCAUUUGAGCUUCUUCAGACAUUGCCCGGUGAAUGAGAGAGAGCUUGUCUUCCUACUAGGUCGACUCUUCCCGUACGUGCUGGACUUCUACUGCUGCUGGUGGUCUGCAGCAAUGGAGCUAGUACGGCAUCCACCGAUGAUUCCUAGGCCGCAGUGGAUCAGAUGCAGCGAUAGGAUAUGAUGUCGGUGCUGAUCGAGGGCACUACUUGUUCGGUGAUCUCUCUCUUAAUUUCUCGUACACUAGCUAGCUAAGCUAGUUCUUCCAUAGUUCCAUGUCUGGUUCAAUGCAAUUGCACUUUCAUUCUUUGAGGGGAGGGGGUUGUCGAUCGAGAAGGACUGAUCGAUUGCAGAUUUCUAACUUGUGUCCUAUGCUUCACGUACGUCGCCGAUCUUCGUAUCACAAAUGUUUAGAUUGCUGCAUUGUCCAUUUCGUGUCUAGCACAUAGUAUUAGUUCAGUUUUGAACCGAUUAUUAAGUAACUUUUGCAUAGUGUACACAACUAAAAAAAGGGGUACAAUAAUAUGCAUGAACUAACUACAUAAACUACACUGAACUAGGACGAUAGAAAUACAAGACUAAUUACUACUCCACUCGGUCCC
Sequence
(OSA-LNCN3319.4):
CAUUCAGCGAGCAUUUGAGCUUCUUCAGACAUUGCCCGGUGAAUGAGAGAGAGCUUGUCUUCCUACUAGGUCGACUCUUCCCGUACGUGCUGGACUUCUACUGCUGCUGGUGGUCUGCAGCAAUGGAGCUAGUACGGCAUCCACCGAUGAUUCCUAGGCCGCAGUGGUACGUACGCUCUUCUCAUGCUAGACCUCAAGAUGAUACACAUGCAUGAGUGCAGGAUCAGAUGCAGCGAUAGGAUAUGAUGUCGGUGCUGAUCGAGGGCACUACUUGUUCGGUGAUCUCUCUCUUAAUUUCUCGUACACUAGCUAGCUAAGCUAGUUCUUCCAUAGUUCCAUGUCUGGUUCAAUGCAAUUGCACUUUCAUUCUUUGAGGGGAGGGGGUUGUCGAUCGAGAAGGACUGAUCGAUUGCAGAUUUCUAACUUGUGUCCUAUGCUUCACGUACGUCGCCGAUCUUCGUAUCACAAAUGUUUAGAUUGCUGCAUUGUCCAUUUCGUGUCUAGCACAUAGUAUUAGUUCAGUUUUGAACCGAUUAUUAAGUAACUUUUGCAUAGUGUACACAACUAAAAAAAGGGGUACAAUAAUAUGCAUGAACUAACUACAUAAACUACACUGAACUAGGACGAUAGAAAUACAAGACUAAUUACUACUCCACUCGGUCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.7%
ME_num:
MEP:
4.88%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.94
Avg Expression:
2.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 7.93825862210809 | 1.89316333511126e-08 |
2 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -5.42317277331118 | 0.00525781990267178 |