Chr:
Chr2
Start:
30839913
End:
30840376
Strand:
-
Ref_name:
OSA-LNCN3316
Sequence
(OSA-LNCN3316.1):
GACCUGCAAAUUAAUCACGGUUUUCUUUUCUUAGAAAGAAAAUUCAGCGUUUUAAUUUUGGCAGAAGUGAGCAAAAAUUUCGAAAUCUUGGCACUACUACGCCAUGUGGAAACGCAUAGUUUAAUGUUCGUAAUCGUACGCUCCAUCAAACUGGCCACCUAACACGGUUGUUGCUAUUCACCAGAAAGAACACCUUUUCUUCGUAACAAGAAUAUAAUUUGGCUACGUUCAGAAUGUUAGGAGGGAAAAGAAAAGAAAAAAGAAAAAAGAAAAAGAAAAGAACUAGUAAAGUACAAGUAGUAGUAGUGAUAACUGAACUGGUCUCUUGAUCUCUAUAUGUUGUAGCUUGUGUUCAACAGCUAGGACAAUUUCGUCAUCAGAUGGAAGCAGUUUAGGUGAAGGAUUUGAUUAAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.97%
ME_num:
MEP:
44.31%
HE_num:
HEP:
7.52%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.94
Avg Expression:
13.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.08392029928528 | 6.70273287597291e-13 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.65191284009837 | 1.18077502401896e-17 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.71478342675409 | 3.13895197992228e-07 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.10604553160029 | 0.00870565282214891 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.39807720270617 | 1.18602554770838e-24 |
| 6 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.61673526800426 | 0.0212854613515222 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.19637492782894 | 1.21391535734359e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.81499075211975 | 7.10566304718844e-13 |