Chr:
Chr2
Start:
30778195
End:
30791103
Strand:
-
Ref_name:
OSA-LNCN3314
Sequence
(OSA-LNCN3314.1):
CAAUUCCCUUUAUAUACAUAUACAGUACAGGUCCAUGGAAUUGGACGAUACAUACGUACAUACAGUACUUGCAAGGUUUGUGAGAGCAAAUAAUCCAUACAUUUCUGAUUCAACACGAAAUAAAAUAAUAUUAUAUUAAGUAAGGACAAAGAAAACUAGUGGAGGAGCCACGCACAAACUAUGGGUUUGGCUGACCCCACAAUUUUUGUACUAUCACCCUUUGUGUGUCUUGAUUUUUUUUUCAUUUAAAUCUAUUAAGUUUUGCACAAAUAACCCCACUACAAUACCAAACAAUAAAAAUUGUUUUCACGGGGUAAAAUUACUGGCUUCGCCACUUACGACAACCAGACCAUACAAUUUGGUAUCUACCAUGUUAGUUGUGGCAAUCUGGCGGCGGUUUAUUAUUUUGGUCAUUGCUGCGGCACGAGGGACCUGGUUGUGAAAGCUGUUGCAGAUACAGAUUUUGGAGGAACUGUAUGAGAGGAUGAUCGCCGGAGGUGGCCGCUCCAACCCAUUUGUCGCCGCCCAGCGGCCGCGCCGAUCCCGACACGACCAACAGCAUAAGCACCGCCAUCAUCAGCGGCAAAACAAACCUCUUCAUCAUGGCCAUACUAUGAGCUCGAUCGGACUUGCGCGCGCGCUGGUGUUUCUCUCGCUCAGAGCUUCUCUCCUCUCCUGUACGUGCAGUGUGUCUGCUCUCUUGCAGCUCACUGUCCCGGGCAAGUCACGACUCACAACUCACAAGCGCGAGUUCAGUGUCUGAUCUGUGCGAGCUCUGUGCAUGCACAAGAUGAUGUCUUUUUUUUUUAAACUAACUGCACAAGACGAUGUCGAGUUGGUCGAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.29%
ME_num:
MEP:
27.24%
HE_num:
HEP:
4.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.87
Avg Expression:
2.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.04163593670043 | 2.1034072432637e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.50914777105424 | 0.000309067273508982 |
| 3 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.89571971333299 | 0.00902162712387592 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 5.82844776517949 | 1.62893247796997e-12 |
| 5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.72435658579933 | 9.20874713300345e-12 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 4.46997331758554 | 3.39864402003322e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.08676017157743 | 0.0202023920281054 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.74769555418593 | 0.0186617720332701 |
| 9 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.88512225739393 | 3.02214225007898e-10 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.35557846528483 | 0.0137945795532657 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.9152081798367 | 0.0256255540522776 |