Chr:
Chr2
Start:
30624938
End:
30627173
Strand:
-
Ref_name:
OSA-LNCN3310
Sequence
(OSA-LNCN3310.1):
UGCGUUUAAAGUUUGUGUAUCAAGAUGUGAGAUUGAGAGUGAGAGUUCGGUCCACUACGUGUCGUGAUCUUGCACACUUGUUUCAAUCGAGCAAUGUAGUAGAGAGGGAUACUUCUUCUGCAAAGCGAAGGAAUCUCAUUUAAUUUCCAGCCACGGGUAAGAACCAAGAUAAUCGCGGUACACACGCUGAGAUAAGGAAGAGCGUGUCCACAUGUAGCUGUCGAUGAGCUUACCAGCAGGUUUAUGAGCUGUCUGGUGUCAGUAGGAUAAGUAAAGAAGGAAGAAUGUGUAAAAUUCUUCUGGGACUGAUUGGUUUCCUACUAUUUUUCUUGACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.27%
ME_num:
MEP:
36.79%
HE_num:
HEP:
8.74%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.92
Avg Expression:
8.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 6.26994080613165 | 1.35262097209828e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 6.01803537970177 | 3.64119136150277e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.35257171650788 | 5.4249914922406e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 7.8721140155355 | 3.45361306318869e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.70431956227205 | 1.46290621913106e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 6.78213213033402 | 8.89039492195355e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.73417338116604 | 1.04685574322802e-05 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.62529428481408 | 0.00972752260341496 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.26180587313419 | 6.77422265263413e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.32723951873723 | 0.00667050666863653 |
| 11 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.4632337566841 | 0.00855108285261664 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.69503241592322 | 7.52011908617601e-08 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 6.36013484415262 | 4.52154025138305e-07 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.08280344009004 | 7.29282370293749e-06 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 6.31143378243279 | 1.06166195257473e-06 |
| 16 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.96448546511981 | 0.0178197257632919 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.81926663311549 | 5.73918314671632e-06 |