RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3298

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

30134397

End:

30135453

Strand:

-

Ref_name:

OSA-LNCN3298

Sequence
(OSA-LNCN3298.1):

CAGGAGAGGCGUUGGAUUUAGCCCGGUUUUUCCACGAGUUCUCGUGACUGUGUACUUGAGCUGUUCGUGGUGGGGUUCAGCAAUGUGCUGCAGAAAUGGAUGCGAGGAGGAGGGCAGGAAACUGGUGGCUCGACUGUAUUAAAGAUGGAGUCACUUCAUUUUUACUGCAACUCCCAACAGAACUUUUUCUUGCCUCUAGGAGUAGUACUCUAGAGACGGAAUCAGCGCCAAAAAAAAAAUGAAGAGGAAAAAAAAAGAACUAGUACUUGUGCCAAUCACCAGCUCAUGAUCGAUCGAUCUGCUUCGAAGUCCGGGCGGCAAGUAAAAAACCGCGCGGUGAACGGCAGCUCCAAUCCAGUUAAUACCAGCUCCAAUUUAUCUAUAU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

376

LEP:

76.42%

ME_num:

115

MEP:

23.37%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root

Tau :

0.88

Avg Expression:

0.94

Tip: OSA-LNCN3298 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-3.99703015982680.0391432013264877
2Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-4.55542298963370.0182765456994269