Chr:
Chr2
Start:
29912779
End:
29913683
Strand:
-
Ref_name:
OSA-LNCN3291
Sequence
(OSA-LNCN3291.1):
UGUUGCGUGCUACUGGGGAAUAUAUAAAUGUACGAACAGCGUACAACCCGGGCACGUACCCAAGAUUGCGGUCACGUAUCGAUCAAGCAUUCAAGCUCUUAUUGAUGGUAGGAUUUGCAGUUGGCAUUAUCUGGUCAUAACCAUAUUAAAUCCCAAGACAACGCUGGAUCGCUGUAGGUGGUAGAUAGGCUAGCUAGUUAACCAGCAUAGUCAUUGUGAAAUUGAGUGAAAUAUUCUCGGUAGAAGGCCCACGCAUGGAAUAGUAGUCUCAGUUAAUUUCCAGUGUUUGUGAACUAGUGCAAAAUGGAAGAUUCUACUUUGGCAUUGCUUAGACAAUCUAAGAGCUUGGACGUGCUAACAUUAGUCCAACAAGAGAGGAAACACGUCAAAAAGGGACUGAAGUUGAUGCAUUUGGUUGGUAGUUAACAUGAUACACAAGAUAAUGGAGUGAUUGUCUGAUGUCUAUAACGAGGACCACAAAUUAACACAACACCCAGUCUUGGUGCCUAAGUACAGAACACCUACAAAGCAUAUGGUACCUUGCCUUCCCCCCUCUAUUAUGACGAGCAACCAAAGAUAUUUUUUCUCAAGUGGGAACAACCAGGAUUGUACUGCUGCUUUGGAUGACUGGAGAACUAACCACUUCUGAAGAAGCCAGGGGGCGUUGGACUGGACCAUCACGUACAACAGUAGUACUACUUCCAUAUCAAAAUAUAGCAAUCAGCACCGAGUUUCUGUUGAGCGUGCCUACAUGCAGCCGUAAUAUCAUCGAUCGGUGCUGGAUGAUUCAAGUCAUGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
13.21%
ME_num:
MEP:
53.46%
HE_num:
HEP:
33.13%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.72
Avg Expression:
12.05
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.85650647365628 | 0.0134122532678767 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -1.64361923472081 | 0.00995369983738291 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.07842234348906 | 0.00247026521028856 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.94266101576754 | 4.57592621769191e-13 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.12188736172549 | 1.23276956351245e-20 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.98206431886245 | 2.28608395907463e-05 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.20019966373783 | 0.000153051621980003 |
| 8 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.12642993292865 | 0.0274793182436035 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.48561619387999 | 1.36052345581393e-23 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.93154912914383 | 0.00608971333911931 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.7277617346376 | 0.00920152482852544 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.72766734874651 | 0.00934326678417548 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.72761463779499 | 0.00924476968531173 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.39753311146157 | 0.00011129176393933 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.61767301540237 | 0.00222579876524127 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.08056256808079 | 1.55566606116741e-05 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.41135096018151 | 2.69018783493867e-17 |