Chr:
Chr2
Start:
29677807
End:
29681217
Strand:
+
Ref_name:
OSA-LNCN3290
Sequence
(OSA-LNCN3290.1):
CGGACCGUCGAGCCUCGGACCUUUUCGCCAUCUAUACUUUCCGCUUUCAAGCUACAGCUCUAUCGUCGCUUGUUCGGCCCCUUUUCCUCCUUUCCUCCGAUGAUUCGUCGUCGGCGGAGAGAGGGAGAGGGGUCCGGUCCUUCCCCCUAGUAUUAGGUUAGUUUAGUCGGGUUUUUCCUGUUUAGUCGGGGUUCUCCCGUUGUGUAGUUGGUUUUUUGAGUCCGGAGCAAGAUGAACACAGCUGGAGCUAGCUCUGGAGUUUGUUCUCAGGGUCUUCUAGUCAUCACUCGGGAUCCCUCCAGAUCUGCGAGUUCACAGGUAGCGUCGACCAACUUUCAUUUCUUCGACGAAUUUCUUCCUCGGCUGGUUCUCCUCUGCUACUUCUCCAGCGAAGGAUUUUUUUUUCUCCAAGGCGUUUGAUAUUUCCAAGUCUAGCCGAGAUGGUCUCAAUCUCCUAUAAAUCGGGUAUGCCUCUCAGUUUUCUUUGCAAACUGCUACGUUCUCUCUCUAAUCCUCGCCAGUGGAAUAGUUAUAGGGUUCAUCCUUGGAAUUUUUGUCUGCAAGCCAACUUUCGCCAGUGGAAGUGGAAUAGUUAUAGGGUUCAUCCUUGGAAUUUUUGUCUGCAAGCCAACUUUCGCCAGUGGAAUAGUUAUAGGGUUCAUCCUGCCAGUGGAAUAGUUAUAGGGUUCAUCCUUGAAAUUUUUGUCUGCAAGCCAACUUUCUUUCACUGAUCCGGAUCCGGAUCCGGCGAAUUUCUUAUAUGUUGUUGCUGAUAUUAUUA
Sequence
(OSA-LNCN3290.2):
CGGACCGUCGAGCCUCGGACCUUUUCGCCAUCUAUACUUUCCGCUUUCAAGCUACAGCUCUAUCGUCGCUUGUUCGGCCCCUUUUCCUCCUUUCCUCCGAUGAUUCGUCGUCGGCGGAGAGAGGGAGAGGGGUCCGGUCCUUCCCCCUAGUAUUAGGUUAGUUUAGUCGGGUUUUUCCUGUUUAGUCGGGGUUCUCCCGUUGUGUAGUUGGUUUUUUGAGUCCGGAGCAAGAUGAACACAGCUGGAGCUAGCUCUGGAGUUUGUUCUCAGGGUCUUCUAGUCAUCACUCGGGAUCCCUCCAGAUCUGCGAGUUCACAGGUAGCGUCGACCAACUUUCAUUUCUUCGACGAAUUUCUUCCUCGGCUGGUUCUCCUCUGCUACUUCUCCAGCGAAGGAUUUUUUUUUCUCCAAGGCGUUUGAUAUUUCCAAGUCUAGCCGAGAUGGUCUCAAUCUCCUAUAAAUCGGGUAUGCCUCUCAGUUUUCUUUGCAAACUGCUACGUUCUCUCUCUAAUCCUCGCCAGUGGAAUAGUUAUAGGGUUCAUCCUUGGAAUUUUUGUCUGCAAGCCAACUUUCGCCAGUGGAAGUGGAAUAGUUAUAGGGUUCAUCCUGCCAGUGGAAUAGUUAUAGGGUUCAUCCUUGGAAUUUUUGUCUGCAAGCCAACUUUCGCCAGUGGAAUAGUUAUAGGGUUCAUCCUGCCAGUGGAAUAGUUAUAGGGUUCAUCCUUGAAAUUUUUGUCUGCAAGCCAACUUUCUUUCACUGAUCCGGAUCCGGAUCCGGCGAAUUUCUUAUAUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.59%
ME_num:
MEP:
52.85%
HE_num:
HEP:
35.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.77
Avg Expression:
17.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.07545943259586 | 9.58095991081588e-24 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.8982796727339 | 4.93036845864635e-24 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.24648917346625 | 4.95507890940892e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.90364169110965 | 4.89755394471759e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.47936775069729 | 1.30839985891895e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.80611812777219 | 4.55752571816192e-30 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.4752177356416 | 1.077175914604e-39 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.06222194768644 | 0.0224166761614472 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.04754097448822 | 0.00219242886261019 |
| 10 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 4.37892043048983 | 0.000324248482391543 |
| 11 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 4.22772257398502 | 0.00163773303040746 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.36745266542142 | 0.0114650689593148 |
| 13 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 1.40279262491682 | 0.0108040469564976 |
| 14 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.20063008679273 | 0.0070073533516491 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.3526142797627 | 2.1955286012564e-50 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.82354316336724 | 1.40687448622553e-27 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.11017418072982 | 6.4715580871504e-06 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.01966020279621 | 0.0339329302732284 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.0507130246287 | 0.00202339215587512 |
| 20 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.01958896025544 | 0.0342922777324284 |
| 21 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.0194818435083 | 0.0340511306066905 |
| 22 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.1456428189536 | 0.00013493186626683 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.70533198174886 | 2.00801874456986e-33 |
| 24 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.67266967799462 | 4.41784707589859e-16 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.75146242176923 | 1.21953807246948e-46 |