RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3288

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

29453314

End:

29454163

Strand:

-

Ref_name:

OSA-LNCN3288

Sequence
(OSA-LNCN3288.2):

AGAAAAUUGUCCUGACUCCUGAUCAUGAUUUAAAACUAGAAAAAGUUUACUUUGUACAGAAAGAAAUCAAGAAAAGAUGAAAGGAAGGCAGAACAUCAACCAUUAUAGAACAAUACAGUAAGGAAGAAGGGUCGACUAUGCUUGCAAAGUAUUAAUAUUGGCAACUACUGUAUAGAUUAAGAAGCCAGUGUGUUUCACUAUCUUCCAGGUUCCGAUGUUCUGUACAAUCAAUGGAUAUGCAAAGUAUUAAUAUUGGCAACUACUGUAUAGAUUAAGAAGCCAGUGUGUUUCACUAUCUUCCAGGUUCCGACGUUCCGUACAAUCAAUGGAUAUGCAACAAAGGCCAAUGCAGAACAUCAAUGGAGUAGCUACACUUCAGGCCACAGUAAACAACCUUUGUAGCUCUUAACGAAUUUGUUCUAAUGGAAUUGCAUUCAUGUA

Sequence
(OSA-LNCN3288.1):

AGAAAAUUGUCCUGACUCCUGAUCAUGAUUUAAAACUAGAAAAAGUUUACUUUGUACAGAAAGAAAUCAAGAAAAGAUGAAAGGAAGGCAGAACAUCAACCAUUAUAGAACAAUACAGUAAGGAAGAAGGGUCGACUAUGCUUGCAAAGUAUUAAUAUUGGCAACUACUGUAUAGAUUAAGAAGCCAGUGUGUUUCACUAUCUUCCAGGUUCCGACGUUCCGUACAAUCAAUGGAUAUGCAACAAAGGCCAAUGCAGAACAUCAAUGGAGUAGCUACACUUCAGGCCACAGUAAACAACCUUUGUAGCUCUUAACGAAUUUGUUCUAAUGGAAUUGCAUUCAUGUAAUUCAAAGAUAACAAGGUGAUUGAUUUAAUUGAAACACCGGUCAGGUCAUUUUAGCAGAUAAGAGACAAAGCACCAGCCACCUAGCAUGCAUGCUACUCCAGCAUAGUAAGUUGCUAUGCAAGAAUUUGCCAGGCUGACAAGCAUCUCUAAUUUUCAACAAAGUUUCAAUUGUUCAUAACCAAUUAAACUCGAGAGCGUUAUCUUGAAGGCUUGAACAGAGAAUCCAAAAAUGUUAAGUAAAUUUCCAUUUAUGAAUUUAUAAAUAUCGGUCCAUAUUACAUGUGUGAAGAUUAUGCAAGUGGUGAGGACGCAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

381

LEP:

77.44%

ME_num:

67

MEP:

13.62%

HE_num:

43

HEP:

8.74%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.95

Avg Expression:

8.23

Tip: OSA-LNCN3288 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"3.823281543354620.041123261347264
2Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"4.180309731096827.55699581264536e-05