Chr:
Chr2
Start:
29499664
End:
29500337
Strand:
.
Ref_name:
OSA-LNCN3287
Sequence
(OSA-LNCN3287.1):
GGAGUGAAUACCUAGUUUGACUACCCAAAUCAGUUAGAGAGUUGGCUAUAUCAGUAUUUGGAGAGCUUAAUUUGAAGAUGUUGUUGGCGAUGCUCUUAAGCAGCUGUUGUUACUUGGACCAGACACAAAAGCCAUUGUAGAGCGUGUGACCACGUGGAGCCGCCUAGCCAUCACGCGUUAUCAUUUAGCCUGUCCCCCCUGUUGCUCUCUCAUUAGAACAAGUUUAAUAGUAUAGCCAACUACUGUCUUUAAAUCAUUUAUAGUCAAUUUAUACAAUAGUUACUUAUAAAUAUAUACUACACAGUUAAUAUCUAGUCCUACCUAUCAUACACAUAUGUAUCUUAUAUCUUAAAGUCCGUGCUGUAGCUGGCUAUAAAUUUAUAGCACGCUGCUUUUCUCUUUCUCUUUUAUCUUCUUAAAAUACACUUAUAGCUAGCUUUUUUAUGAAAUAGUCUAUUGAUGUACCUGCUCUUAAGGUGGUGGAGGAACUUUAGUCCCUCCUUUCUAAACACCACCUUAUAUCCGUCCGAUCUCAGGCCAUGCUCCAAUCAUAGUGGCUAAUGGAAAAGUUGGAGACAUCCCCAAAAAUGCCUACUUAUUGCCUAGCCAAUCUCGGCAUGCACAAGGCCAGCUAGCUCAUCAAAGGUAAGUGAAGCCACACACAUAUGCACUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.5%
ME_num:
MEP:
6.3%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.93
Avg Expression:
0.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.04287230302299 | 0.000990394236613345 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.2418405255184 | 0.00199323851457597 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.81063118181023 | 0.00106700398491793 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.50436541646715 | 0.000445054390453195 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -2.12785901247098 | 0.0455859441047695 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.5473590020219 | 0.024243718798012 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.51323412562532 | 0.000986613119252503 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.82047251985316 | 0.0129905142090093 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.16497175257508 | 0.0147866629204064 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.09611279671123 | 0.000435280515119486 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.48101162242672 | 0.00472429511831117 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.46520150944543 | 0.000562432875079428 |