RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3284

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

29257302

End:

29258799

Strand:

+

Ref_name:

OSA-LNCN3284

Sequence
(OSA-LNCN3284.1):

CUUAUCCUCUCGCUUAAAAAAAAAAAAGAAAAACGCGAGUGGACUGGAGAUGGAGAGGCGAUGGCGAUGUGGGCGAGCUAGCGAGCAAGGCGGUGCGGGCGGCGCCAAGCGGAGGAGCAGCGGCACGGGCUGCUGGGCAGCGCGACGGAGGAGCAGCGGCAUGGGCUGCUAGUACUACUACUACUACUUCUUUGCAGGGGCGGCGGUGGCUGUGCGGCCGGGAAGGCGAGGGGCGGCGGCGGCCGGGCGGGUGAGGGGCUCGGCGGCGGCCAGGCGGGCGAGGGGCGC

Sequence
(OSA-LNCN3284.2):

AAAAAGAAAAACGCGAGUGGACUGGAGAUGGAGAGGCGAUGGCGAUGUGGGCGAGCUAGCGAGCAAGGCGGUGCGGGCGGCGCCAAGCGGAGGAGCAGCGGCACGGGCUGCUGGGCAGCGCGACGGAGGCGGCGGCCGCUCGGGCUGCUGGGCGGCGCAACGGGGCAGGGCGGCGCCGAGCGGAGGAGCAGCGGCAUGGGCUGCUAGUACUACUACUACUACUUCUUUGCAGGGGCGGCGGUGGCUGUGCGGCCGGGAAGGCGAGGGGCGGCGGCGGCCGGGCGGGUGAGGGGCUCGGCGGCGGCCAGGCGGGCGAGGGGCGCCGCGGCGGCCGGGCGGACGAGGGGCGGCGGCGGACGACCGGCGAGGGGCGGCGGCGGCGGACCACCGCCCUCCCUCUGCCGCUUUCCUCUCCUGCGUGAGGGUGACAACACGGGCAUGGAUUACGAUGCGACACCUGGGUCGACCUGGCAGGAAUCUCUCGAGUGCGGACAGCGGCGGCCGAGCAAAGCAGCGGCAACGCGGCGUGACGCGACCGAAUCGUGCCCAGCUACAGCACCGCGCAUCAUGCCACUGCCGCUCCGGUCGCCCUAAUGGAAGCACUUUAGGUCCGCCUCAGUCCUCAGUUCAAGUACUUCAGGCCUCACUUCAGGACAGGUACCAUCCGGAGGAAUUCUUGCCGAUUCACAAAUCGAAUUAUUUGUUCUUCGAUUUUUACUUAUUUUUGUAAGAAUAUACUUACCUUGUAAGAGCUCAAUGAAAUUCUCUGCAAACUAAUUCGAGUUGAAGUGCGUGGUUCCUUCUUCUUCUUUUUUCUUUUUUUUGAAAACGACACUUGAUCACAGGAGACUGCAACGUCAUCUAAAACUCCUCGUUGGUUCUAGCAGUAGGACUAGAGUGCAUCUCAACGAUCGACCAUCAUAACGAGUUCCACGUAGCUAUUCGUACAUACGCUAGACCUAAUAAUACUGCCCACGAGUUCACCUACCCUGUUCAAUCGAGAGCCAGAGCAUUCACCGAAAACAAAUCAUGGUAAGAGCAAAACCUUAUGAUGAACAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

2

LEP:

0.41%

ME_num:

169

MEP:

34.35%

HE_num:

320

HEP:

65.04%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.65

Avg Expression:

17.68

Tip: OSA-LNCN3284 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi-1.021445492992590.0223160336390579
2Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.237671376568740.0167159908663756
3Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift1.169313081064750.00153892497596026
4Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.500840569031042.28726955491919e-35
5Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"1.094224711080450.000168743438095724
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.002287205648520.00417333467795823
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.259667511682360.00158520928167359
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.334935229792032.53551755599208e-05