Chr:
Chr2
Start:
28094127
End:
28096332
Strand:
+
Ref_name:
OSA-LNCN3255
Sequence
(OSA-LNCN3255.1):
CUCAAUAAUACGCGCGUUCCAUCUCCAUCAGGAUCAGGGAGGGAGAUAUGAGAUAUCGUUAACAAAUUUCUCGAUCGGUAGUGCUCACGUCAAAGCCUUCAGUCGCUCAGUCGGUUGAGUGAGUGGUUCAGGGCUUGCUACUUGCUUCCUAGUGUAGCUAGCUUGACUUGAUGCGCCACAGCACUAAGCCGGAGGAAGAAUCCCAGCAAGCAUUUGCACGAAUCAUCUCUGACAGUGAAGCUUCCAUUCCGAUUUCCGGUGUCAUCUUCUUGAAAGUAAAUUUUCCACGUGUGAUCUUACCUUUGCUUUCGUUUUCCACCUGUCCAUUUCGAUCGUUAUCAGGAUGUACUUUACCCCUUGUGCGAGGAAGCAUCCGACCGUAUUGGGGGAGGCAACAAGAUUUCAUUCUUAAUGCCAUCAGACAGAGACUAGAAUUCUCUGAGAUGUAUUUUAUGGUUAUACUAUCAGAUAAGAGGUCGGCUGGAAAAAGCGCCAAGAACAGCGUGCAAUGAAGAGACGAUCAAACAAAGAGAUUUCAACUAUUUUAUUGCAAAGGAAAGAGCUUGAUUUGUGAGCUUGUGGUUGGCCAUGGUGCCAGGGAAGCCCACCUCACCUGCAGCCUAACCAACGCCACUAAUUCGUGAACGGGAAAUCUAUCCAAUCCAUAAUACAGAAGGAAAUCAAGGUAUUUGCAAUUCAUUUUACAUGCGUUUGUUUCGCCGGGCCGCUUCAACCAAUCAUGAAUCUUGGAGGGGAUGUGGAAUUGUGAGUGCGCCAGUGACCGGCUCUUUCGGAUCCAAGAGCUGAUAGAGCCUCAGAGCGGGACUCAUCCUCUGCAUCAGUUUCCACUUUGGCAUAGUCUUAGGACCUGUUUAGAUGGGACUAACUAUCACAUCGGAUGUUUGGACACUAAUUAUAAAUAUUAAACGUAGACUAUUAAUAAAACCCAUCCAUAAUCUUGGACUAAUUCGCGAGACAAAUCUAUUGAGCCUAAUUAAUCCAUGAUUAGCAUAUGUGAUGCUACAGUAAACAUUCUCUAAUUAUGGAUUAAUUAGGCUUAAAAAAUUUGUCUCGCGAAAUAGCUUUCAUUUAUGUAAUUAGUUUUGUAAGUAGUCUAUAUUUAAUACUCUAAAUUAGUGUCUAAAUAAAGGGACUAAAGUUAAGUCCUUGGAUCCAAACACCACCUUACUCCCUACAUUUGAUGUUAAACACAGUUACAAGUUACUCUCUCCAUACUCAUAAAUGAAGUCAUUUUGGACAGCGACACGAUCUCCAAAACAUAACUUUGACUUCUUGUUUCUAUAAAAAUAUUUAUUAAAAAGUGAUAUAUGUAUACUUUUCCUUGAGUCCAUCCUCUCUGAGGGCCACCUUUGGUCUUUAGCUGGUAUAGCUAUUUUUGGGGUUCUCCUGGGAAGGUAGUGGCUCUGUCCCCUUCCAGCUAUUUGGAGUUGUGUGUAACCGUCACAGUAGUUUUUCGUCUCUUCUUUAUUUUAGUCUUUUUUCCUCCUUUCUUGGCAUAAGUCGGUCUGACUGAUUGCGUCGUGUGACAAACAUUCUAUUCUUCUAAUAUAUUGACGUGCAAUCCUUUUGCGCGUUCGAGAAAAAAAUAUAUGUAUACUUUUAUGAAAAUAUAUUUUAAGACAAAUAUAUUCAUAUAAUUUUUACAUUUUCAAACUCAACAACUUGAGAGUUAUUCAUGAUUUAUAUUCCCAAGGUUUGACUUAAACAUUGUCCUAAACGACUUCCUUUAUGAGUACGAAGAGAGUAUUAAUUAAUCAUUCCAUGUCAAGGCAUAUGCUUAUCCUUAAGAUCCUCCAAAAGGUGGUAAACAACAGUGCAAGAGUCGAAACAUGGCUCUUCAAGUCUUCAUUGUCUCUGCCUCUCCGAAAAUGCUUUUUUGCUUAUUGCCCUUAAAAAGUGUAUUAUUUUGUUUACUCGUUAUUAUGCAAUCUUUUUUUUUUCAAUUCGAUCCUACAAGAAUGGCCAGGUAUCCUAGUGGGCCAUAACAAC
Sequence
(OSA-LNCN3255.2):
AUUUCUCGAUCGGUAGUGCUCACGUCAAAGCCUUCAGUCGCUCAGUCGGUUGAGUGAGUGGUUCAGGGCUUGCUACUUGCUUCCUAGUGUAGCUAGCUUGACUUGAUGCGCCACAGCACUAAGCCGGAGGAAGAAUCCCAGCAAGCAUUUGCACGAAUCAUCUCUGACAGUGAAGCUUCCAUUCCGAUUUCCGGUGUCAUCUUCUUGAAAAUAAGAGGUCGGCUGGAAAAAGCGCCAAGAACAGCGUGCAAUGAAGAGACGAUCAAACAAAGAGAUUUCAACUAUUUUAUUGCAAAGGAAAGAGCUUGAUUUGUGAGCUUGUGGUUGGCCAUGGUGCCAGGGAAGCCCACCUCACCUGCAGCCUAACCAACGCCACUAAUUCGUGAACGGGAAAUCUAUCCAAUCCAUAAUACAGAAGGUGCACAUUCUCAUCUUAUCUUUUGCAUUAAACAAUAUUACUGAUUUGACUUACGAUCAGGAGAAGGUGCUCAGAUAUUGGUUGACCAAACUACUGCUGCAAGUGCUUGAGUUUGUGUCAUUGUGUGGCUAUUUUGUAUUUUGCUUGCUGGGACACUUUGCUCUUUCAGCGACUAAACUACUGACAUGUGCAUUAGGAAAUCAAGGUAUUUGCAAUUCAUUUUACAUGCGUUUGUUUCGCCGGGCCGCUUCAACCAAUCAUGAAUCUUGGAGGGGAUGUGGAAUUGUGAGUGCGCCAGUGACCGGCUCUUUCGGAUCCAAGAGCUGAUAGAGCCUCAGAGCGGGACUCAUCCUCUGCAUCAGUUUCCACUUUGGCAUAGUCUUAGGACCUGUUUAGAUGGGACUAACUAUCACAUCGGAUGUUUGGACACUAAUUAUAAAUAUUAAACGUAGACUAUUAAUAAAACCCAUCCAUAAUCUUGGACUAAUUCGCGAGACAAAUCUAUUGAGCCUAAUUAAUCCAUGAUUAGCAUAUGUGAUGCUACAGUAAACAUUCUCUAAUUAUGGAUUAAUUAGGCUUAAAAAAUUUGUCUCGCGAAAUAGCUUUCAUUUAUGUAAUUAGUUUUGUAAGUAGUCUAUAUUUAAUACUCUAAAUUAGUGUCUAAAUAAAGGGACUAAAGUUAAGUCCUUGGAUCCAAACACCACCUUACUCCCUACAUUUGAUGUUAAACACAGUUACAAGUUACUCUCUCCAUACUCAUAAAUGAAGUCAUUUUGGACAGCGACACGAUCUCCAAAACAUAACUUUGACUUCUUGUUUCUAUAAAAAUAUUUAUUAAAAAGUGAUAUAUGUAUACUUUUCCUUGAGUCCAUCCUCUCUGAGGGCCACCUUUGGUCUUUAGCUGGUAUAGCUAUUUUUGGGGUUCUCCUGGGAAGGUAGUGGCUCUGUCCCCUUCCAGCUAUUUGGAGUUGUGUGUAACCGUCACAGUAGUUUUUCGUCUCUUCUUUAUUUUAGUCUUUUUUCCUCCUUUCUUGGCAUAAGUCGGUCUGACUGAUUGCGUCGUGUGACAAACAUUCUAUUCUUCUAAUAUAUUGACGUGCAAUCCUUUUGCGCGUUCGAGAAAAAAAUAUAUGUAUACUUUUAUGAAAAUAUAUUUUAAGACAAAUAUAUUCAUAUAAUUUUUACAUUUUCAAACUCAACAACUUGAGAGUUAUUCAUGAUUUAUAUUCCCAAGGUUUGACUUAAACAUUGUCCUAAACGACUUCCUUUAUGAGUACGAAGAGAGUAUUAAUUAAUCAUUCCAUGUCAAGGCAUAUGCUUAUCCUUAAGAUCCUCCAAAAGGUGGUAAACAACAGUGCAAGAGUCGAAACAUGGCUCUUCAAGUCUUCAUUGUCUCUGCCUCUCCGAAAAUGCUUUUUUGCUUAUUGCCCUUAAAAAGUGUAUUAUUUUGUUUACUCGUUAUUAUGCAAUCUUUUUUUUUUCAAUUCGAUCCUACAAGAAUGGCCAGGUAUCCUAGUGGGCCAUAACAAC
Sequence
(OSA-LNCN3255.3):
CUUCAGUCGCUCAGUCGGUUGAGUGAGUGGUUCAGGGCUUGCUACUUGCUUCCUAGUGUAGCUAGCUUGACUUGAUGCGCCACAGCACUAAGCCGGAGGAAGAAUCCCAGCAAGCAUUUGCACGAAUCAUCUCUGACAGUGAAGCUUCCAUUCCGAUUUCCGGUGUCAUCUUCUUGAAAAUAAGAGGUCGGCUGGAAAAAGCGCCAAGAACAGCGUGCAAUGAAGAGACGAUCAAACAAAGAGAUUUCAACUAUUUUAUUGCAAAGGAAAGAGCUUGAUUUGUGAGCUUGUGGUUGGCCAUGGUGCCAGGGAAGCCCACCUCACCUGCAGCCUAACCAACGCCACUAAUUCGUGAACGGGAAAUCUAUCCAAUCCAUAAUACAGAAGGUAUUUGCAAUUCAUUUUACAUGCGUUUGUUUCGCCGGGCCGCUUCAACCAAUCAUGAAUCUUGGAGGGGAUGUGGAAUUGUGAGUGCGCCAGUGACCGGCUCUUUCGGAUCCAAGAGCUGAUAGAGCCUCAGAGCGGGACUCAUCCUCUGCAUCAGUUUCCACUUUGGCAUAGUCUUAGGACCUGUUUAGAUGGGACUAACUAUCACAUCGGAUGUUUGGACACUAAUUAUAAAUAUUAAACGUAGACUAUUAAUAAAACCCAUCCAUAAUCUUGGACUAAUUCGCGAGACAAAUCUAUUGAGCCUAAUUAAUCCAUGAUUAGCAUAUGUGAUGCUACAGUAAACAUUCUCUAAUUAUGGAUUAAUUAGGCUUAAAAAAUUUGUCUCGCGAAAUAGCUUUCAUUUAUGUAAUUAGUUUUGUAAGUAGUCUAUAUUUAAUACUCUAAAUUAGUGUCUAAAUAAAGGGACUAAAGUUAAGUCCUUGGAUCCAAACACCACCUUACUCCCUACAUUUGAUGUUAAACACAGUUACAAGUUACUCUCUCCAUACUCAUAAAUGAAGUCAUUUUGGACAGCGACACGAUCUCCAAAACAUAACUUUGACUUCUUGUUUCUAUAAAAAUAUUUAUUAAAAAGUGAUAUAUGUAUACUUUUCCUUGAGUCCAUCCUCUCUGAGGGCCACCUUUGGUCUUUAGCUGGUAUAGCUAUUUUUGGGGUUCUCCUGGGAAGGUAGUGGCUCUGUCCCCUUCCAGCUAUUUGGAGUUGUGUGUAACCGUCACAGUAGUUUUUCGUCUCUUCUUUAUUUUAGUCUUUUUUCCUCCUUUCUUGGCAUAAGUCGGUCUGACUGAUUGCGUCGUGUGACAAACAUUCUAUUCUUCUAAUAUAUUGACGUGCAAUCCUUUUGCGCGUUCGAGAAAAAAAUAUAUGUAUACUUUUAUGAAAAUAUAUUUUAAGACAAAUAUAUUCAUAUAAUUUUUACAUUUUCAAACUCAACAACUUGAGAGUUAUUCAUGAUUUAUAUUCCCAAGGUUUGACUUAAACAUUGUCCUAAACGACUUCCUUUAUGAGUACGAAGAGAGUAUUAAUUAAUCAUUCCAUGUCAAGGCAUAUGCUUAUCCUUAAGAUCCUCCAAAAGGUGGUAAACAACAGUGCAAGAGUCGAAACAUGGCUCUUCAAGUCUUCAUUGUCUCUGCCUCUCCGAAAAUGCUUUUUUGCUUAUUGCCCUUAAAAAGUGUAUUAUUUUGUUUACUCGUUAUUAUGCAAUCUUUUUUUUUUCAAUUCGAUCCUACAAGAAUGGCCAGGUAUCCUAGUGGGCCAUAACAAC
Sequence
(OSA-LNCN3255.4):
CAGUCGGUUGAGUGAGUGGUUCAGGGCUUGCUACUUGCUUCCUAGUGUAGCUAGCUUGACUUGAUGCGCCACAGCACUAAGCCGGAGGAAGAAUCCCAGCAAGCAUUUGCACGAAUCAUCUCUGACAGAUGUACUUUACCCCUUGUGCGAGGAAGCAUCCGACCGUAUUGGGGGAGGCAACAAGAUUUCAUUCUUAAUGCCAUCAGACAGAGACUAGAAUUCUCUGAGAUGUAUUUUAUGGUUAUACUAUCAGAUAAGAGGUCGGCUGGAAAAAGCGCCAAGAACAGCGUGCAAUGAAGAGACGAUCAAACAAAGAGAUUUCAACUAUUUUAUUGCAAAGGAAAGAGCUUGAUUUGUGAGCUUGUGGUUGGCCAUGGUGCCAGGGAAGCCCACCUCACCUGCAGCCUAACCAACGCCACUAAUUCGUGAACGGGAAAUCUAUCCAAUCCAUAAUACAGAAGGAAAUCAAGGUAUUUGCAAUUCAUUUUACAUGCGUUUGUUUCGCCGGGCCGCUUCAACCAAUCAUGAAUCUUGGAGGGGAUGUGGAAUUGUGAGUGCGCCAGUGACCGGCUCUUUCGGAUCCAAGAGCUGAUAGAGCCUCAGAGCGGGACUCAUCCUCUGCAUCAGUUUCCACUUUGGCAUAGUCUUAGGACCUGUUUAGAUGGGACUAACUAUCACAUCGGAUGUUUGGACACUAAUUAUAAAUAUUAAACGUAGACUAUUAAUAAAACCCAUCCAUAAUCUUGGACUAAUUCGCGAGACAAAUCUAUUGAGCCUAAUUAAUCCAUGAUUAGCAUAUGUGAUGCUACAGUAAACAUUCUCUAAUUAUGGAUUAAUUAGGCUUAAAAAAUUUGUCUCGCGAAAUAGCUUUCAUUUAUGUAAUUAGUUUUGUAAGUAGUCUAUAUUUAAUACUCUAAAUUAGUGUCUAAAUAAAGGGACUAAAGUUAAGUCCUUGGAUCCAAACACCACCUUACUCCCUACAUUUGAUGUUAAACACAGUUACAAGUUACUCUCUCCAUACUCAUAAAUGAAGUCAUUUUGGACAGCGACACGAUCUCCAAAACAUAACUUUGACUUCUUGUUUCUAUAAAAAUAUUUAUUAAAAAGUGAUAUAUGUAUACUUUUCCUUGAGUCCAUCCUCUCUGAGGGCCACCUUUGGUCUUUAGCUGGUAUAGCUAUUUUUGGGGUUCUCCUGGGAAGGUAGUGGCUCUGUCCCCUUCCAGCUAUUUGGAGUUGUGUGUAACCGUCACAGUAGUUUUUCGUCUCUUCUUUAUUUUAGUCUUUUUUCCUCCUUUCUUGGCAUAAGUCGGUCUGACUGAUUGCGUCGUGUGACAAACAUUCUAUUCUUCUAAUAUAUUGACGUGCAAUCCUUUUGCGCGUUCGAGAAAAAAAUAUAUGUAUACUUUUAUGAAAAUAUAUUUUAAGACAAAUAUAUUCAUAUAAUUUUUACAUUUUCAAACUCAACAACUUGAGAGUUAUUCAUGAUUUAUAUUCCCAAGGUUUGACUUAAACAUUGUCCUAAACGACUUCCUUUAUGAGUACGAAGAGAGUAUUAAUUAAUCAUUCCAUGUCAAGGCAUAUGCUUAUCCUUAAGAUCCUCCAAAAGGUGGUAAACAACAGUGCAAGAGUCGAAACAUGGCUCUUCAAGUCUUCAUUGUCUCUGCCUCUCCGAAAAUGCUUUUUUGCUUAUUGCCCUUAAAAAGUGUAUUAUUUUGUUUACUCGUUAUUAUGCAAUCUUUUUUUUUUCAAUUCGAUCCUACAAGAAUGGCCAGGUAUCCUAGUGGGCCAUAACAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
97.36%
ME_num:
MEP:
1.83%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.96
Avg Expression:
1.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.86897043482569 | 1.50329913134996e-17 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.48073309031385 | 1.42871799022196e-22 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.63214606908352 | 6.7635666583014e-07 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.4411473998062 | 0.0194940570943821 |