Chr:
Chr2
Start:
27884846
End:
27886433
Strand:
+
Ref_name:
OSA-LNCN3249
Sequence
(OSA-LNCN3249.1):
CUCACAACCGUUAGCCCCAUUGUGAUCUCACCCAGUUGCUAGCCUCUUUUGUCACCUUGUCACAGCUCUCCUCCAUUCAUUACACAAUGGCAUCAGCCUUCUAAUCCUCGUUGUGUAGCAAUCUUUCACAUGCUUGACACACAUGAAGUUUCUGUAGAUUGCUGAAGCUGUAGCCUUUAUCUCACAAGGGAAGGUGGCUCAACAGGCACGCAGGGCCAUCUGAUCAUGGCCGAAAAUGAUUGGUGUUGCUGAUAUUGAUGAAUGUACUUUCGUUCAAGGUGAGAGAAGAACGUUGGAAGAAUCCAGUUAAUGGCGCAAGUACAUACUAGUAGUAGAUUUAAUUCAAACUGCUGGUCUAGUUAAAUACGUACUAUAUUCAUAUUUAUUUAGGUGAUAUUUUAUUUAAACAUAUAAUAGACGCAAAUACAAAAACACUCGUAUACACUUAUAUAUUUGUCCUUAUGAACACUCAUGCACACCGUGCUUCUAACUAUGAGUGUAUAUCAUAAGAAUGAUAAAGUUAUCGUAGGAGCCUCGUUGUUGACAAGUACAUUGCUAACAACUUAAAGAACAAUUAACCGUAAAUACGAACAACCAUAUGUACUAAGUGUGAUACUUAAACUCGAUACACAGGUUCAUUAUAAAGGACCUUAGCAGGUAAGCUAGACUAUUUGCUUUUUAAAGGUUAAAUUUGAUGCCAAUGUGCUUUCAAGGCUGUGUUCUUUUCUCCUGAAGAUGCCCCGUUUGUUUCUUCUGCAAGGGUAGGAUAAAAUUUUGGAUUCUCGUGGCACGCUUUUUAAACUACUAAACGAUGUGUUUUGUGCGAAAACUUUCUAUAUGAAAGUUGCUCUAAAAUAUCAUAUUACUCCAUUUUUUAAGUUUGUAAUAAUUAAAACUCAAUUAAUCACACGUUAUUACCACCUCAUUUUGCGUGAAACACUUAAUCUUUAUCUUCAUCUUCAUUUUCAGGAGAUUCAAACACCACCUAAGGUUAAGUUUUUUAUGCAAAACGAG
Sequence
(OSA-LNCN3249.2):
UCACCCAGUUGCUAGCCUCUUUUGUCACCUUGUCACAGCUCUCCUCCAUUCAUUACACAAUGGCAUCAGCCUUCUAAUCCUCGUUGUGUAGCAAUCUUUCACAUGCUUGACACACAUGAAGAUUGCUGAAGCUGUAGCCUUUAUCUCACAAGGGAAGGUGGCUCAACAGGCACGCAGGGCCAUCUGAUCAUGGCCGAAAAUGAUUGGUGUUGCUGAUAUUGAUGAAUGUACUUUCGUUCAAGGUGAGAGAAGAACGUUGGAAGAAUCCAGUUAAUGGCGCAAGUACAUACUAGUAGUAGAUUUAAUUCAAACUGCUGGUCUAGUUAAAUACGUACUAUAUUCAUAUUUAUUUAGGUGAUAUUUUAUUUAAACAUAUAAUAGACGCAAAUACAAAAACACUCGUAUACACUUAUAUAUUUGUCCUUAUGAACACUCAUGCACACCGUGCUUCUAACUAUGAGUGUAUAUCAUAAGAAUGAUAAAGUUAUCGUAGGAGCCUCGUUGUUGACAAGUACAUUGCUAACAACUUAAAGAACAAUUAACCGUAAAUACGAACAACCAUAUGUACUAAGUGUGAUACUUAAACUCGAUACACAGGUUCAUUAUAAAGGACCUUAGCAGGUAAGCUAGACUAUUUGCUUUUUAAAGGUUAAAUUUGAUGCCAAUGUGCUUUCAAGGCUGUGUUCUUUUCUCCUGAAGAUGCCCCGUUUGUUUCUUCUGCAAGGGUAGGAUAAAAUUUUGGAUUCUCGUGGCACGCUUUUUAAACUACUAAACGAUGUGUUUUGUGCGAAAACUUUCUAUAUGAAAGUUGCUCUAAAAUAUCAUAUUACUCCAUUUUUUAAGUUUGUAAUAAUUAAAACUCAAUUAAUCACACGUUAUUACCACCUCAUUUUGCGUGAAACACUUAAUCUUUAUCUUCAUCUUCAUUUUCAGGAGAUUCAAACACCACCUAAGGUUAAGUUUUUUAUGCAAAACGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.07%
ME_num:
MEP:
7.11%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.97
Avg Expression:
5.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.3368957518847 | 1.529954722324e-21 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.31470868858551 | 7.85052466355217e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.32012810494025 | 0.0478011622223415 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 7.25426332509011 | 4.54507281883667e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.28295077524022 | 2.21560733259539e-05 |
| 6 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 5.61190981079341 | 0.00205437634087676 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.01028564500419 | 0.0187709109555937 |