Chr:
Chr2
Start:
27643836
End:
27644739
Strand:
.
Ref_name:
OSA-LNCN3245
Sequence
(OSA-LNCN3245.1):
CCUAAAGAAAAUAGCAAAUAGAGGUGGAGAGAGGAGGAAGAAAUAAUUGGUCGCUGACAUGUGGGAUCCACGUAGUCCCACGCUGAUUCAGCUUGCCACGUCAACUAAAACCGGGCAUAAUACUAUCUUGGAUAUAGGGUAUCUGGUUUUGUAAGUUAAGAGAUUGUUAUAUAUGACAAGAGACCUAACGCGGCCUUAUUCCUUUCCUAGUAUGUCCUUCUUAGCCUUCCGGCCCAGCAAUAAUUGCGCAUGCAAUGCACCACCACUUUUAGGCCUACUAGUUGUUCGUCAUGGUCUCGCACUCUCUGAUGUGGUGGCGGCAGAGAUGGCAACGGGUGCGUACCUAUCGGGUUCGCUUACCCCAUACCCACACCCAUGGAAAUCAAAUGUCCCCACUCCAAUACCCACACCCGCUCACGGGUGAAAAAUUCCCCCAUACCCACACCCGCACGGGUGACGGGUACCCAUUGGGUACCCAUACUCAUUGGAGCUGAUCAAAUUAUGCACAAUUGCACACUAAUCCAUCCAGUUAGACAACCCAACCAGACAGCAGUACAAAUGUACAACACAUCAUAGCAGUGAUUUUUACAAAUUAGGAUCAAAAGGUCAACAAAUUAACAAAUCAAAUGGUAAUUCAUAAGUCUGAUGCCAGGCAUGCAGUCCACUCCAACAUACAUCCAGCCAUCCUACAAUGCAUCCAAAGACCAUCGCCAUGCUGCUGUGGAGUUGGGAAGAGGGAGGUGUCUGGAAUUUUUGGGUAUGAAGGCUGAAGAAGGCGAGAUGGCGACGCGGCUGCAGCCUCAGUGGCUCUGCCACGAGCCCACCACAGAAUCCCCAAGUCCUAACUCUAGCUAGCCACCUGCGCCCUGUGGUCCUGCCUCGGCGAGUCGGAGAGCGGCCCCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.82%
ME_num:
MEP:
9.76%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
1.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.57365037325031 | 0.000485911853909565 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.58770356539578 | 0.000257049581994569 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.52599942365195 | 0.000229450268812876 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.82165033005342 | 1.03470283837329e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.72022408404384 | 0.000130987675899557 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.91604127926399 | 0.00571566665935147 |