OSA-LNCN3241


Function Link


Basic Info

Chr:

Chr2

Start:

27371866

End:

27376946

Strand:

-

Ref_name:

OSA-LNCN3241

Sequence
(OSA-LNCN3241.1):

CAUCACAUGAGGCUAAAACUGGAAUCUGGGGUACCUCAGGAUUCAGGCGCACACAAAAAUUAUGUGGCCAACCGACGGCCGUUAUCUUCGAUCACCAAACGUAAGUACGUACUGUAACCCGUAAACCUAUGGUGCAAAUGGUCGAUCGAGAGCCGUAAUAAACGGGGCACGCACGACAGGGGCCAGGGAAUGUCCCGCUGCCGCCUCGUGACCUGCUCCGACAGUCGACAGAGCAACUACAGUAGCACCAGCCCCCCGACCACUGGCGGUCUGCUACACAGUACUGCGCCCACCACCGCUCCUCGAACGCCGCGAGAGACCCGGGCGCUCCUCACGUCGAUCGUCACGUGGCUCCUCCAGCCCCCUGGCCUGGGCCGGCCGUCGCCACCACCACCACGCCGCUCCGCCUCGUCCCUCGCGCCCGCCCCGGCCCGGCGCCUGUCGGCCACCUGCCGCCCACGCAGGGCGCACGCUGGCCAUCCCGCGCGGUGCCAUCGCCAAUGCUUCGCGGCUGCGUUGCACAGCGGGUUAACACGUAGUACACGCUUGGUACUCCUGCGCCGCGAUGAUUCCCGCAAGAGAGACCCCCCCGCGCGCGACCCCAGCCCAACCGGCCUACUCUGCCGAUCGAGCGAGCGCGGGCGGGACACCAACCGCGCCUCGUCUUGUCUUCUCCUGUGACGCCACAUGCGUCGCGUGCCGUGAGUGCACGCGAGGCCGCGGCCCCUCCGGGCGGGAGAGGCGGGCGCUUCGCCCCCCGCUUUUACCGGCGAUUGGCUCGGGGCCAUCCGCUUUGGGCCGGCCGAGACUGUUCACUUCCCUCUCUUCUCCUCCACUCCUGUGGCCUCCUUUCGCGUACUACGCUUUGGCCCGCCCGCCGCGGCGUGGCAUCAUUGCGCGCUCGUUAUCCCCGGUGCUUUUGCCUUGCCCAGUUGCCCUCCCUCCCUUUACCUUCGGUUGGCUUCUGUUACGUCGGGAUCGGUGGCACUGCUGCUUUGGCGCCACAUAAAUAGGGGGAUGAGUGCGUGUUUUGUUGCUCCUAGUACACUCUCGUUUGGUAGGAGUAAGUACUCCGUUCACCAACACCGUACCUCUCCCAUUUUUGGUUUGACGACUUGUCAGGAAGGAACAACAGUGGUUUGUCUAUGGACCAUGAAGCAGGCUUUGGCCACGAAUGUCAGCAGUAUAGUGUAGGAUUUGGCGUAGUCUAUUUCGUUUGGAUCUUGGAUCGUAUAACGUGCGAUUCGGGGUUGAUGGUCCGUGAUCAUCAGACGUGCUAGUACUUAGCAGCUUGGACGUCAGGGAGGCCUGCUUUAGUAACAGAAUCCUUUGUCCUUUGUAUUUGUCCGAGAUCCCUAGGCCUAAAUUCUCCGCGUGACGCGUGCUUUGCAACCUCUAAUCCAUUUGUAGAGGCCCAAAAGGAAAGUACUCAUGUCCAAUGACUAUGGCCCAUUUACAUCUAGUUCAAAGCCUAUUUGAGCCUCUAUCUCGAAAGCCCAUCAAACGACAAAGGGCUGAUAAAUCCUUUUUCGCCCAACCGGCGUGGAAGCCGGCCGCAAGGGGCUGACAAAUCUUGUGCCUAAGGGUCCUUCGGCUAAAUUGGACUCAUGAUAAUCGGAGCGGGGCGACUGGGAGUGGCAGUUCAAUGGGCGUUUCGAAAUUUGUCAGCCCCUUUCGAAAGGAAUAAGUUCACUUUAGGUCCCUUAAUUUGUCGCCAGUCUGAUUUUGUCCUCAGACCAGAAAACCGGAUACAAUGCAUCCCCCAACUUUACAAAACCGUGCAGACGAGAUCCCUCGAUAGUAUUGUGCCCGGUUUUGGAUGACGUGACGCCUACAUGGCAGGUUUGACUAGGUCCUCGUCCCACGUGUCAUUGACGUGGCGUUUACGUGGCAAUUGGAUCCCGGAAAAAUAAUAAAAAAACAUGGGACCCCAAUUUCAGCUACAUAAAAAAAUAAUUUUAAAAUGGUGGGGCCCACAUUUAAAUGACACGUUAGACAAAGACCUAGUCAAAAGAAGCCACGUAGACGCAACCUCAGCCAAAACCGGGGUCAAAUACUGCCGAAGGACCUUAUUUAAACGGUUUCGUAAGUUGGGAACCCGUCGUACCCGGUUUUGCGAUCAAGGGAUGAAAAUCGGAUUGGGCGAUAAAUAAAGGGACCCAAAGUGAACUUAUUCCCUUUCGAAAUGACAUGUUGGGAAAUGGGGCUUUCAAAAUUUAAGCUGUCUGAAAAAAAAAUCUACGAAAUACGAAAAUCUUUUUUUUAAGUAGUGUUAAAAAUAUAUUCGACGCCACACCAACUUAUGACAAAGCUUUAGUGGGUUCUUUUCUCCCAUUAUCCAACUUCUACCCUCGUUUUUGAAGCGCAUGUUUUCCGAACUAUUAAACGAUGCGUUUUUUGCAAAACUUUCUAUAGGAAAGUUGAUUAAAAAAUCAUAUUACUCCAUGUUCAAGGUUUUUUUAUAGCUGAUCCAUUAUAAUUAAUCAUGUGCUAAUAAAUCAUUCUAUUUUUCGUGCUAAAGAGAAGUUUUGAACAUGUAGGUUCGAACUCAGCCUUACAAAUGCAGAGUUGAUUGACCAAAAGCAGUUCAUUACUUCACCGAGCUCUACAAAGAUCUAGGGGCUGAUCCAAGGCCCAACGACACUAGGCUUGCUAGUUGAUCACACACUGCACUAGGCGAUUGACAUCCCCUAUCUUCAAAGUUACUGUAUCUUUGUCACUAAUACGUGGAUACAAGAUUUAUCGGGCUCAUAGUAAUGUUAAAGUCAUGUGACUUCGAAGGAAGUUUCAAGAUCCGCCACUGCGAAGAUCAUAUCUUUCCUACGGUAUUCAGCGGUAACAUAGCAAUAAGGAAAAUUAUCUCAAGUUGCAUAAAAUCUGAAGGACACUUCCUCUCGGUGAUCGGUGAGCAUUUCCUCCACCAACCGCCGUGCGCCACCCACCGGAGGGGAAAGGCCAGAUUAAGUCACCAUCAAUCUGCAGAUACAUGCCUCUAGAGAGUAGACUAGCUCCUAUGUUGUUCUUUGUCGCGUGCUGGAAAGAAUUCGCUCGUACGAUAUGCGUUUGGUCGUUCCACUACUUAUGUGAUAGGCGGCUUGGCAUCUCAAUAUGAGCCGUCGUCCUCCCGACCGAGCCCUAGCAAAGCAUGAUAGCGUCUUUUGCACCACGAUAAGUGCUCUCUUCUUGCACUCACCAGCCAUCCGUUCAGGCUGCGGUCACUUUAAACAGAGUCGUGAACAAAAUUGCCGCCUUUGCAGGACGUGGAAAGGCCUCUUAAUUAAUCACACCAAUAUGUUAGUUGGGUGAUGGUCUCCUUUACUUUCUCUAAACUUUUGACGGAGUGAGGAAGUACUAGUAUAUAUAUGGUGAAGAUGAGCUAGAUAACUGUGUAUCGUCUGUUUUUCUUAUCAUGUCUCCAUGGCAAAACAAUCGAAAGCGUUAUUGU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

13

LEP:

2.64%

ME_num:

192

MEP:

39.02%

HE_num:

286

HEP:

58.13%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.74

Avg Expression:

32.92

Tip: OSA-LNCN3241 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.607347931924050.0488884738675953
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-1.685498713125180.0317279098778419
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.927213563884330.0120932626552364