Chr:
Chr2
Start:
27228842
End:
27229647
Strand:
+
Ref_name:
OSA-LNCN3237
Sequence
(OSA-LNCN3237.1):
ACUCUACCACAACCAUUACGCUAUCCGCCACGAGCAAGCGAGCGAGAGCGAGGCAAAGCAAGAAGGCGACCUCACCAAAUAAUCCCCCACCACCACAAGAAGCAGGGGCGCGCCAUGGCGAGAGCCGCUACCGUGGCGGCGGCGUCGUCCGCGCUGCUGCUGGCGCUGCUCCUGGCGCUGCCGCGGCUGACCGGCCUCCACCACCACCAACCCGCUGUUCGAACUGGAUUCAAAGUUCGUUCGUUGCUCCUCUCCGUCUACUCGCUAGUUCGUCUUCUUCAUUUUUUUCUCCCCUUCCUUACUCUUUUUUUUUCUCCGCCCUGUUUUAACCGUGAAAGAAGAAGCACAAUUGGUCUGGAUCGGUGCCCAGGAAUCGAAUCGAGUGAAUAAGAUUUGUGUCACUCCAGUCCUGUAUGUGGAUUCUAAUAAUAUUAAUAAUCAAGUUGUGUAUAAACUGGUGGAUAGAUUUAUCGUUCAAGGAUGAGUGCUGCUACUGAUGACAACCCGGUGAGCAAAUUCGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.33%
ME_num:
MEP:
16.46%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.83
Avg Expression:
0.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.41676227562636 | 0.00256115512495431 |
2 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -5.29254081757932 | 0.0133035184530159 |