Chr:
Chr2
Start:
26726482
End:
26727913
Strand:
.
Ref_name:
OSA-LNCN3225
Sequence
(OSA-LNCN3225.1):
AAAGACGAUUUCUAGGGGGGAAGUUUUGUCCCACGAAAAACCAAUCCCUGCUCACAAAACGAGAAACAUUCAAUUACCCCGUCCUCAUCGGUUCUCCCCCAUCUUAUCUCCUCCCACCAAUUUCUCUCCUCUUCAGAAAUCACGUUCACACGACAGUGCCUUCAUCGCUCUGCCGCUCCAUCUCCCUCUCCGCCUUCUCCCGUUCCUCCCCGCACCUCCCUCCCGCUCCACCAUCUCUCCCUGUCCAUGGCCUUCCGCAUCAAUCUCGAUGUGGUGAUAGAGGCAUAAGCUUGCAAGGAGGGAGAUCCAACGCAGCCGACGGUGGCGUCGGAUGGAUGCGGCUCGGAUGCGAUGGUGAAGGUGAGAGUGACGAGCGGAUGCGGCGUCGAUGGCGGGGGCGGCCACGAGCGGAGGCGGCGUUGUCGGCGGGGACGGCCACGAGCGGACGCGGCGUCGUCGGCGGGGGCGGCCAUGAGCGGACGCGGCGUCAUCGGCCGCGGCGGCAACGAGUGGACGCGGGCGUUGGCGAGAUGCUAUAGUAUUUCUCUUUUUCUCUGUUCUUGCUCUUCUCUGUUCUUCUUGAUACUUGCUAGUUCAUGCAAGCAUUUGUUUUUUCUGAUUAACUGGAGAUGUUAUCUUUUCUUCUUGCAAGUGUAAAAUUUGAUUAGUUCUUUUUUUUUCUAGAUUUGAGAUAUGUUUCUUCUUUCAGCAUUGUAAAUUUCACAAAAAAAAAGUCUUCUUUUCGGGCACAGAUGCCUGUGUAUGCAUUGUAGUACUACUGAUGAAUAGGUACAGAGAGUGGCAGUGACGAUGAAUGGCUGUGGUUAAUAAGGGCACUUUGGUAUUUUCACUUCAUCCCUAAACCUGCAUCGAGAAUCUAGGAAUCGAUACUUUCUGGGACGGAGGGAGUAGUAGUAGUACAAUCGUUAGCCACCGCAUGACUAGUAUAUGCAUUCAACCAACUAGAUGACAAACAUCAGAUAAUAAAAGAAAAGGAGAGGAAUAAGAAAAUGACAAGUAAGAAGCUGUUCCUCUCGUCGACGAUGAGAUCGAAAGUAUCAACGGGGCACAUUAAAUUACCCUUAAUUUUUUUGGCACCACUGCUCGUCGUGGUGAGGCAAGCUCCGCUUCCAACCUGUUUGGAACUCCGGCCGGCGGCCAGUAUUCCUCUAAUGAUCUAAUCCGCCCAUGCACCAACACGGCAACACCACCCUGGCAUGCAUCGAUCUGGAUAUUGGCAGCAUUUUCGUGGGCGUGGCUAAUGGGCUAUCGAUCCCCAUCCCCCUAUACACUCCUCUCCCCUUUUCUUCUCCACUUCUUCUCUUCCUACUACAUCAUAAAUUUAAAAAAAAUAAAAAGACAAAAUUGGAAAAAAUUAUGUAUAAAAUACUAUAUAUAAAAAAUAUUUGAAUUCAAAUUUAAAUUUGAAACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.31%
ME_num:
MEP:
66.06%
HE_num:
HEP:
14.43%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.64
Avg Expression:
6.05
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.22316541902065 | 0.0219865413118033 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.14413950495249 | 4.36952760545966e-06 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.52003964661521 | 4.88101393373192e-08 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.11349541267331 | 3.36288860175488e-08 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.87249078730306 | 0.000125236375862073 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.74339841672492 | 9.61940546303008e-11 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.72420496602258 | 0.0445060020369871 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.38192324236632 | 0.00263109761551767 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.07631274467211 | 0.00782154219923938 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.64520314982314 | 0.0018557184429436 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -6.77210958867294 | 0.00064717570755055 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -6.77219057972384 | 0.00065492440669058 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -6.77227776727018 | 0.000648762072002634 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.27176973605619 | 2.33770275553142e-07 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.12218084706618 | 0.0011318542965675 |
| 16 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.88320940553931 | 0.00557286900389219 |