Chr:
Chr2
Start:
26510995
End:
26516811
Strand:
+
Ref_name:
OSA-LNCN3221
Sequence
(OSA-LNCN3221.1):
GGGAGUAAAUGUGUGGUAUAGUUGAUUUAAUUUCAGCUGCAAUAUUGGGUCAACAAGUACUCACUAAUGAGUAACCCGUGUCCAUUCCUUAUACUCAUUGGAUCGUAUAGCAUGCAUAUCGACCAGCAUGUAAAUAAAGAACGGAUAAUUGGUGCACUACAGCAUUUGCCAACGGACAAGCCGCCUAAUAAGCAAAGGCUGCAAGCGCCCUAUCGAUGGUGCACAUACACGUACGAGCAAAUGCACGCCACGCACAGCUUAACUUUCCUCCUUUUCUUUUGCACCAUAGGCGCCUCCUGCCUCUAUCUCUAAACCAGACUGACAUGACUAGCUAGCAAGCACGCACGCACGCCAUAUGAUAGAGGGUAAUACUAAUCCUUUGCACGUUUGUGUGCAUGAGGUACUAGUACUGUAAGAAAAGAAUGCGUUACCCAACCCACCACUGCACCAGUAUUAAAGUCUACUGAGAGGCAGCUGCUAGUUUCUGAUGGGAGCGACACUAUACUACACGUAGAGACAAGGUGAAUAAAGGAUGAUGCAUAAUGACGAGGAUCAAAGGCAUUCAAAGAUUAGAUUCCUUGUGAUUGUGCGGACGAUGGUUAGGGCUCAAAAAUGGCCCACAAAAGAGAGCACCUAGCAAAUGAGCAGAUGAGAUAGAGGGAGGGAAUGAAGCGAGGAGUACUGAAACUUCAAUAGUUGAGCACGUACUCGAGUGGUAUGAAAGCUCAGCACCGCGUCCACUCCUUUAACUGCAAUACUGUGUAUACUUCUACUUUACUUGCUGCAUUAUACGGCCGGGUGGUAAUAAGAGCACGGCAAGAAAAUCUACACAACUACGCAUAUAGUCCAUCUCUCUCUCAUUAUGCUGGAUGAUCGAUGGGGAUCCGAUGUCUACUUGGUUAGGCACAGAAAAGAAGAUGAAGACGCGCCGGGUGAGGAAUUUUUCUUUGUUUUGUUAGAAGAAGGGCGAUGUAUGUGCAGACAUCAUCCUAAUCAGCAAAGGCAGUAAAGGAAUUAAUGGUCCAGACUCCUAUGGAUCAAUCGAUCGAUCGCGGCUUCACGUACGAACGAACCAAAAGGGGAGAUAGGGAAGAUUGUUACUCCUUUUCCGCACGCACGCUUUUUAAACUACUAAAUG
Sequence
(OSA-LNCN3221.2):
UGUGGUAUAGUUGAUUUAAUUUCAGCUGCAAUAUUGGGUCAACAAGUACUCACUAAUGAGUAACCCGUGUCCAUUCCUUAUACUCAUUGGAUCGUAUAGCAUGCAUAUCGACCAGCAUGUAAAUAAAGAACGGAUAAUUGGUGCACUACAGCAUUUGCCAACGGACAAGCCGCCUAAUAAGCAAAGGCUGCAAGCGCCCUAUCGAUGGUGCACAUACACGUACGAGCAAAUGCACGCCACGCACAGCUUAACUUUCCUCCUUUUCUUUUGCACCAUAGGCGCCUCCUGCCUCUAUCUCUAAACCAGACUGACAUGACUAGCUAGCAAGCACGCACGCACGCCAUAUGAUAGAGGGUAAUACUAAUCCUUUGCACGUUUGUGUGCAUGAGGUACUAGUACUGUAAGAAAAGAAUGCGUUACCCAACCCACCACUGCACCAGUAUUAAAGUCUACUGAGAGGCAGCUGCUAGUUUCUGAUGGGAGCGACACUAUACUACACGUAGAGACAAGGUGAAUAAAGGAUGAUGCAUAAUGACGAGGAUCAAAGGCAUUCAAAGAUUAGAUUCCUUGUGAUUGUGCGGACGAUGGUUAGGGCUCAAAAAUGGCCCACAAAAGAGAGCACCUAGCAAAUGAGCAGAUGAGAUAGAGGGAGGGAAUGAAGCGAGGAGUACUGAAACUUCAAUAGUUGAGCACGUACUCGAGUGGUAUGAAAGCUCAGCACCGCGUCCACUCCUUUAACUGCAAUACUGUGUAUACUUCUACUUUACUUGCUGCAUUAUACGGCCGGGUGGUAAUAAGAGCACGGCAAGAAAAUCUACACAACUACGCAUAUAGUCCAUCUCUCUCUCAUUAUGCUGGAUGAUCGAUGGGGAUCCGAUGUCUACUUGGUUAGGCACAGAAAAGAAGAUGAAGACGCGCCGGGUGAGGAAUUUUUCUUUGUUUUGUUAGAAGAAGGGCGAUGUAUGUGCAGACAUCAUCCUAAUCAGCAAAGGCAGUAAAGGAAUUAAUGGUCCAGACUCCUAUGGAUCAAUCGAUCGAUCGCGGCUUCACGUACGAACGAACCAAAAGGUAAAAGAGGAACAAAUUAAGAGAGCCCAUCCGAAAGAAUGGCAGCUCGAUCAAAAUGUCGUUGCAUCCCGUGCCAAAUGCCAUGCAGUACUACUAACGGGAGAUUGUUCUUUCAGGGGAGAUAGGGAAGAUUGUUACUCCUUUUCCGCACGCACGCUUUUUAAACUACUAAAUGAUGCGCAAGCAAACAGUGGGGGAGACUUUGGAUUGGAGCCUUGGAGGAAGCUAGGACAGCCGGUAGCUAGGCACAAUAAAUUUGCUGUGUGUGCAGUGUACCGGGUCUUUUGAAGAACGAUCAUUGGAGAGCAUAUAUGGCAAAAAUCCCUGUUCCCAGGAUACACACCAGGGUGAUUUUAUUGAACAUUCAUUUGCUUCAGUACAUGACGAAUUGAGCGUUUUACAGCUACGCAUGGAAGCUGUUCUCUGCUUCGUGCCGAAAGUAAACUGAUCAAUAAAAGACAGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.69%
ME_num:
MEP:
66.67%
HE_num:
HEP:
27.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.76
Avg Expression:
15.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.91943230158234 | 0.00992425474999673 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.06868808175039 | 0.00382834199632343 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.71846091783128 | 0.00486184781506368 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.73845045414382 | 0.0125667772008842 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.6789975175224 | 0.00133484400384161 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.41433321296083 | 0.0193706304595581 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 5.54961433907022 | 0.0448276269959129 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.77767451729103 | 0.00498814147211439 |