Chr:
Chr2
Start:
26026848
End:
26030611
Strand:
+
Ref_name:
OSA-LNCN3202
Sequence
(OSA-LNCN3202.1):
AAAAACAAGAACAAAACUGAAGUGUAAAACACAGAACCACAACAUAGAAGGAAAAGGCUACCAAAAAAUAGCUCAAGAAAGCCAACAGGUAAAGAAAAACAUUUCUGAAAACCAAACCAGUGUACGAAAGAAAUAGCCAUCGAAGGGAUGUUGCAAAAAAUACCUCAAUUUGGGUAGCAUAGUAUGAUAAGAACCAAGGUGCAAUGAGAACUUAAGAACCUGUUGGCCUCCAACUCAGUAAACCAGCCAAUUGAUAUGUAACUAAUUGAACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
30.69%
ME_num:
MEP:
48.17%
HE_num:
HEP:
20.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.88
Avg Expression:
26.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.74901903619007 | 8.90685527504407e-57 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.61364200635928 | 1.1527086035744e-53 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.70674988343363 | 1.04931462499146e-57 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.30942050140561 | 1.91152561651464e-31 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.83192471950515 | 6.0355175563305e-51 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.30992309227053 | 2.45505426975683e-40 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.27367214675102 | 2.79209894398084e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.71050595057405 | 2.22143646547874e-12 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.73776348861521 | 2.48817974311802e-58 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.95064546661261 | 0.00583234566252277 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.85712475485605 | 5.76567875781738e-32 |
| 12 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -1.279360695429 | 0.00731033503403887 |
| 13 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -1.18202577243721 | 0.010908152411283 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.98133034626012 | 8.10483764243276e-66 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.43971920701712 | 1.10663546862469e-49 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -7.17330260504224 | 2.33629400958304e-05 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 5.75361779909779 | 4.30560917187265e-08 |
| 18 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -4.41003339657842 | 0.00987014940160333 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.25177099577272 | 2.09711248564025e-39 |
| 20 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.04729749436346 | 9.9719717040134e-07 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.8106310498544 | 6.67093716618872e-27 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 1.53933657097133 | 0.00620894918942503 |