RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3196

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

25480443

End:

25481389

Strand:

.

Ref_name:

OSA-LNCN3196

Sequence
(OSA-LNCN3196.1):

GGUAAAUUGGAACCAUUCCAUUAUAAUUUUGCAAAGUUUGAGAUAUGACAUCGGUAUCUCAAUGACAUAUAGGACCCACAUGAAUCAAUGACAUGUGGGUCAGGAUGGCAUAUCUCAAAUUUUGUAAAAUUUUAAUGGUAUGGUUCCAAUUUUCCCAUUCUUCAUUCUUUCUUUUAAGGGCAUGUAACGAUGUUAUAGAAAACACAAAAUGCCUCUACUGCCCUUGCUCAUUUGACCCUAUUUUAGAUUUGUCAGAUUUUGGUCAAAAUUGACCUAGAUUUGUUAGAUUAUUUUUUCAAAUUAGAUUCCAGUUUAACAAAAUAGACUUCAAUUUGGUUAUGUUUCACAAAUUUAACAUAUAUUGAAGCAAAAAAAAUAAAUUAAUUCAUGUCUACCAAAAAAACAUCCCAAAACACAAAUCCUUCUUGCCCAACACUCGAAGGUCCUAUCGCCGCCGCCGUCGCCGACCUGCCACUCCGCUGCCCGCACGAAUCGGCGCCGUCAGAUCUGCCGUCGACACACCGUUGUCGCCAACCUGUCCCCCGCAUGCCUCGGCGCCAUCGGAUCCACAUCCCGCAGGCCGAGUCGAUCUGUUGCUGAUGCACCGUUGCAACUCGAGCUUUGUCGCCGCCAUGCCGCUGUCACCGACCGCCGCCACCAGAUCCGUAGACCGCACACCAUCGCAACCAGAACUCCGCCGCCCGGGUCCUGCCGUCGCUGCUCCUUCUCGUCGCAAGCCUCCGCCGCCCCUCCCCGCCAAAUUCACCUGCCGUAGCCCAAGCUCCGUCACCAAAUCUGCCCCUCGCAGCCCGAGCUUCGCCACCGAGGCCCCCGUCGCCGCCACUCUUCCGUUGCGUGGCUGGUUCUGCACCGUGGGGAAAGCUAUGGAAAGAAAGAGGGGAGAUCAAGAGGAUAAGGAAUGAGGGUAGGGUUAAUGUGUUUACUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

95

LEP:

19.31%

ME_num:

378

MEP:

76.83%

HE_num:

18

HEP:

3.66%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.63

Avg Expression:

3.93

Tip: OSA-LNCN3196 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-5.990140986267020.000338932275059485
2Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.310057790197850.00949961835219967
3WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h-5.799927021655470.0110215145176218