Chr:
Chr2
Start:
25392918
End:
25395650
Strand:
+
Ref_name:
OSA-LNCN3194
Sequence
(OSA-LNCN3194.1):
AUAUGGAAUCAAAGUAAACUGCUUUAUUACAUCACUGGGUAGUAGUCCUUACAAACGUUGCUAUCAUGGACAUGCCCAUAGAUGAACAACACAACAUUACAGAAAAACACAAAAGCGAUGGCGCAGAAACGAACAGCGUGGAGUACUAAGCAACUAAGUGACUACGCACUAGGCAAAGAACCUAGGCAACUAACUUAUUCCACAGGCGAGGCUUGGGGCUAGGCACGAAACAUCUAAAAGUCUUCAUACUCGGCUUGCUCCUGGAGAUACUUCUCGGCGGUCGGGUCGACGUCUUCAUCUUCAAACUCUAUAGAUUAUUAUAAGGGGCAAGGAUGAGUACUUAACGUGCUCAGCAAGCCAGGGAAAAGAAUGACAUGUCGGUUUAACAAGGAGGCUACGGUUUUAUUUGUGAAGGCUGCCAUUUUGGCAAAAUGAUUUAUUUCACAAAACUCCUAGUGAGUGAGUCAAGUUUUAGUUGUCGGGAGGAGGCUCACGCCUCGACCCAUUCCACAAGUUGCUUUGCAACAACUUGUCACAAUUAACGAACAACAAUUAAAUUGUUUUCUCUAUUAGUUCCUUUUUCACAACAACACAGUUCACACAAAUCUCCUGGUUAUCCCAGCACAUCAACGCCAUCAUGGCCCUAACAACACCUCGGUGUCGGACGACACCUCAGGUCACACAGACCCGUUCCUAACCACAAAGGUUAGCUGUCUGCCACACAGGCGGACUCUGGUAACGUUCCCUUUUCAGUAACCACUUUUCCACAAACCUUUGUCAAACAAAUCUACGCUAUGAGAAACACCUUACACUCGCCCUUGACCGUGGGUAUGGCUGUUAAAACAGUUCAUUAAUCUCUGCAGAGAUUGCACGCUUUACCCACACGACACGAAACUUACACCGGUACUGGCCGGUACCGGAAGUUCGUGAUAAGGCCUUUCCAAAGCUAACCCAUGAAAAUCGCAUACCACCUAGUUGGGCAAAGAUCCAUAGCCGAGUAUCAGGCAAUGACAGCCGUCAUCCACUCAGGAAAUACCGAGGAUGCCUCCUACUCCUACUGGUACCACGCCACAAUAGAGGCAAAAAGACACCCAUGAUGGGCAAUAAAUGUGUAACACUUCGUCUCCUCAUCCUCGGUAUUGCACAACCAUUGGCACACCAACUCCCAUGUGAAAACAAUUUACUCAGCCAGAGGCAUCCCAUAAAUACCCGUGUGGUCACACUGUAAUGUGUUCGGAUGGAUUUCCCAAAGGAAUCAGUCCUUAACGACAAUACGUGGCCAAACCACAAAGGCUUGACUCCGCAUCAUCACCACUUUCACAACACAUUUUAUUUCACAACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
45.12%
ME_num:
MEP:
34.35%
HE_num:
HEP:
20.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.93
Avg Expression:
20.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.62929345881699 | 0.00531141455528132 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.99526460767417 | 0.000321273058348102 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.96108135053125 | 0.0042889961280931 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.36696465951169 | 0.000885004437968762 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.72711805621595 | 0.00102501437728077 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.33756308368519 | 0.000155870276605479 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.77195890122578 | 0.000505215263859945 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.59176389447014 | 0.0144441933498979 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.22813379348038 | 6.71552126717166e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.78708490059704 | 0.000171537350464176 |