Chr:
Chr2
Start:
24941759
End:
24942501
Strand:
+
Ref_name:
OSA-LNCN3185
Sequence
(OSA-LNCN3185.1):
UGUUUUUGAAUGCUCAAAAUGAUAGAUGUUUGAUUCUUUAUUUGAAGAAAACGGCACAAGACAAAAGGGAACAUAUUUGACCAAGAAAUAACUGUUAAAGAGACAAUUUGUUUUCCCAAUGUGCAUACAAGGUUUUAGCAUAGAACCAUAAGCUCAAAGCCAAAUUUGUUGCAAAACGUAAGCAUGAAUUGCAUUCACCCCAAAAAAAAUAAACGAAAAGAAGAAUAAUUUUUCCAUUGGAGAAAGUGAAACCAAAAAAAAAUCAUAUAUUUUUACUAUGAAACUAGCAGUUCAAUUCAAAGAUCAGUUUGCUUCUGUGGAUAAACUGUAUGAUGAAAAUGCAAUUUGAAAGUUAAUAUCAGAGAUGCAUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.11%
ME_num:
MEP:
50.41%
HE_num:
HEP:
17.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.73
Avg Expression:
7.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.35610514561737 | 4.3887317732159e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.20196222629136 | 2.11875357607088e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.54617851533365 | 0.00185108512237764 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.22688690692084 | 0.0363737076849785 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.07249299708189 | 1.25718954229826e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.82972552383399 | 6.96451398296536e-05 |
| 7 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.16060728299227 | 0.00352196345513203 |
| 8 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.95622684013992 | 0.0255302450906413 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.88360898844368 | 1.38123140310437e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.27539561793507 | 5.17266991226041e-08 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.48331574640409 | 4.09004852052503e-09 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.61264125701868 | 1.43642120623917e-12 |