Chr:
Chr2
Start:
24928195
End:
24929371
Strand:
+
Ref_name:
OSA-LNCN3183
Sequence
(OSA-LNCN3183.1):
AAGAAAUUACUCGGAUGGUGCAUUCGCAUGCGCGUGCGGCGUGCUUACCUCUGGCGGUUGGCCGCGGCUCGGUCGAUCUGUGCUGCAAAAGCGACCAUCGGGCGGGCUAGUCCGAUUUUUGCCUGGUCGAAGUUCUCGCGGAAAGAAAAGACGACUGGGUUUUCCUGAUCAUUUAGCAGUACAGGCUGCUUUUGGAGAAGAGAGAAAGGUGUACUAAUUAAGCUCAAAGAUGCCGGUAUUGUUCUUUCAUGCGUGAUUAAUUAAGCUUUCUUGACUUGCAGGAUAUCAGCCGUCAUACAUACCCAAUAAGUUGUCUAUCAGAUCAUUAGCACUUAUGUCCGUCCUCCAUUUUUCUUCUUUGAUUCUACUAUUACAUUUAAUUGUAGGAGUUCUUUCUUUGGGCACGAAAAAGGCAGCACGUACCACUUGUGACCUCGGAUGUCUGAUUAGCACUAAUUUCACGCCUUACACGACAUAGCGUGUUGUGAUGUCAAAGAAGGGCUGCGUCGCUGCGAGCAUACUUCCCCGGAAGACCGCAAUAGGCCGAGAAUUUAUGGGUCUUCAGAGAUCGGCGUUCAACAAGGGAACAAUUAUUGGUAUAUUCGACGAACAAAUUCUUGCGUGUUUUUUCUUCUCCAAGUGCAGAGUUCGCCAUGUGUUGUUGUUGGGCGACAUUGACCAGCUGUUGCGUCGGCAUCAGGAAGAGAGAGGGAGAGAAUGCAAUGGAGAACGUCAUCUUAAGAAUGUAAGACCGUGGCAGCGUCACGCGUGAGAUCAGCCAAAGUUGCCGUCAAACUGAUACGUUGAAACUUUGGGAGCGAGAAGAACUAGCUAGCCGGAAAUUUGGUCGAUCAGUUAUCUUGCCAAUUAAUUUAAGUUAAUUUAAUUUGGCCGGUCGACGUUUCUUCAAAGGUGUACAUCGCGGUUUGAAACGAACCAUGGAAUGAUGGAAUUCACCGUCCGGACUUCUUGUAAAUCUUUUUGAAGUCUCGCUUCCGGACGGUUCCAUUAGGUCAACGAGUUUUUCUCCGAAGAUUUUUUUGGUGCCCUACCCCAUGCUUGUUGGGUU
Sequence
(OSA-LNCN3183.2):
GGCGUGCUUACCUCUGGCGGUUGGCCGCGGCUCGGUCGAUCUGUGCUGCAAAAGCGACCAUCGGGCGGGCUAGUCCGAUUUUUGCCUGGUCGAAGUUCUCGCGGAAAGAAAAGACGACUGGGUUUUCCUGAUCAUUUAGCAGUACAGGCUGCUUUUGGAGAAGAGAGAAAGGAUAUCAGCCGUCAUACAUACCCAAUAAGUUGUCUAUCAGAUCAUUAGCACUUAUGUCCGUCCUCCAUUUUUCUUCUUUGAUUCUACUAUUACAUUUAAUUGUAGGAGUUCUUUCUUUGGGCACGAAAAAGGCAGCACGUACCACUUGUGACCUCGGAUGUCUGAUUAGCACUAAUUUCACGCCUUACACGACAUAGGUGAUGCCUUUUUCUACUUCAAUUAAUUAUACCAUAGUCUUACGGGUCUCUGCAUUGUCAAGUUAUCACGCAAGAAGAUGCUUUAAUCCACCAUAAUAUGUACUGUAGCGUGUUGUGAUGUCAAAGAAGGGCUGCGUCGCUGCGAGCAUACUUCCCCGGAAGACCGCAAUAGGCCGAGAAUUUAUGGGUCUUCAGAGAUCGGCGUUCAACAAGGGAACAAUUAUUGGUAUAUUCGACGAACAAAUUCUUGCGUGUUUUUUCUUCUCCAAGUGCAGAGUUCGCCAUGUGUUGUUGUUGGGCGACAUUGACCAGCUGUUGCGUCGGCAUCAGGAAGAGAGAGGGAGAGAAUGCAAUGGAGAACGUCAUCUUAAGAAUGUAAGACCGUGGCAGCGUCACGCGUGAGAUCAGCCAAAGUUGCCGUCAAACUGAUACGUUGAAACUUUGGGAGCGAGAAGAACUAGCUAGCCGGAAAUUUGGUCGAUCAGUUAUCUUGCCAAUUAAUUUAAGUUAAUUUAAUUUGGCCGGUCGACGUUUCUUCAAAGGUGUACAUCGCGGUUUGAAACGAACCAUGGAAUGAUGGAAUUCACCGUCCGGACUUCUUGUAAAUCUUUUUGAAGUCUCGCUUCCGGACGGUUCCAUUAGGUCAACGAGUUUUUCUCCGAAGAUUUUUUUGGUGCCCUACCCCAUGCUUGUUGGGUU
Sequence
(OSA-LNCN3183.3):
GCCGCGGCUCGGUCGAUCUGUGCUGCAAAAGCGACCAUCGGGCGGGCUAGUCCGAUUUUUGCCUGGUCGAAGUUCUCGCGGAAAGAAAAGACGACUGGGUUUUCCUGAUCAUUUAGCAGUACAGGCUGCUUUUGGAGAAGAGAGAAAGGUGUACUAAUUAAGCUCAAAGAUGCCGGUAUUGUUCUUUCAUGCGUGAUUAAUUAAGCUUUCUUGACUUGCAGGAUAUCAGCCGUCAUACAUACCCAAUAAGAGUUCUUUCUUUGGGCACGAAAAAGGCAGCACGUACCACUUGUGACCUCGGAUGUCUGAUUAGCACUAAUUUCACGCCUUACACGACAUAGGUGAUGCCUUUUUCUACUUCAAUUAAUUAUACCAUAGUCUUACGGGUCUCUGCAUUGUCAAGUUAUCACGCAAGAAGAUGCUUUAAUCCACCAUAAUAUGUACUGUAGCGUGUUGUGAUGUCAAAGAAGGGCUGCGUCGCUGCGAGCAUACUUCCCCGGAAGACCGCAAUAGGCCGAGAAUUUAUGGGUCUUCAGAGAUCGGCGUUCAACAAGGGAACAAUUAUUGGUAUAUUCGACGAACAAAUUCUUGCGUGUUUUUUCUUCUCCAAGUGCAGAGUUCGCCAUGUGUUGUUGUUGGGCGACAUUGACCAGCUGUUGCGUCGGCAUCAGGAAGAGAGAGGGAGAGAAUGCAAUGGAGAACGUCAUCUUAAGAAUGUAAGACCGUGGCAGCGUCACGCGUGAGAUCAGCCAAAGUUGCCGUCAAACUGAUACGUUGAAACUUUGGGAGCGAGAAGAACUAGCUAGCCGGAAAUUUGGUCGAUCAGUUAUCUUGCCAAUUAAUUUAAGUUAAUUUAAUUUGGCCGGUCGACGUUUCUUCAAAGGUGUACAUCGCGGUUUGAAACGAACCAUGGAAUGAUGGAAUUCACCGUCCGGACUUCUUGUAAAUCUUUUUGAAGUCUCGCUUCCGGACGGUUCCAUUAGGUCAACGAGUUUUUCUCCGAAGAUUUUUUUGGUGCCCUACCCCAUGCUUGUUGGGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.09%
ME_num:
MEP:
6.3%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
1.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.88922060131359 | 7.49982302453972e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.10178267391404 | 0.0151148090947688 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.12588483585913 | 0.0118094141120552 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.88256631304493 | 0.00203622235156227 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.85445337364185 | 5.25488213994297e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.11696546304089 | 0.0142979295394219 |