Chr:
Chr2
Start:
24724386
End:
24725644
Strand:
+
Ref_name:
OSA-LNCN3176
Sequence
(OSA-LNCN3176.1):
AUUGAUGCGUCAAAAAAAGAGAGAGAGAAACAGGUACAGUACGGGGAUGACUCAGCACCUUAAUGCGGUAUACUGCGGCGCGGUUACGCCAUAACGCGGGCGCGGCGGCCUCCGUGUUUCACUCUUGCGUUGCGGCGCGCGCAUGAGGCAACAAGGCAGGCAAAGGCGCGAGAGCUAGCGGUUGCAACAACUGAAAAAGUUUCUUCCGGUCGGUCACGCAGGACGCGCUUGCCGACGCCCGGUGCCUGCCUCGUCCCGGGGAGUCGGGACCGAGCACGCAACAGCUUGCGAUGGAGUCACCGCCCCGUCCUCAUUUCUCCCCCCCCUCCUCAUACCUAGACAGAGAGCGAAGCCAGAGGCGAUGGUUUGGCGACGAGCUCGACGGAGAGAACGACGAUGAGCUCUUCAAUCCCUGGCCACCGUCUUCAAUCGUCGCCGUCCCGCACCUUCUUCCGCCGCCGGCCACCAGAUCCGGGAGGGUAGCCGGUAGCGAGCAGUGGGGAAAGAGAGGGGGCUGCAGCGGUGACCAGCGCAGCGAGUGGAGGACGGUGGCAGCCAGCAGAGCGGGUGGAGGACAGCGACGACCAGUGACCGGCGCAGCGGGUGGAGGACGACGACGACCGGUGCGGAGGAGGAGGGUUGCGGCGAUGACCAGCGCAGCGAGUGGAGGACGGUGGCAGCCAGCAUAGCGGGUGGAGGACGACAACGACCGGUGCGGAGGAGGGCUGCGGCGAUGACCAGCGCAGCGGGUGGAGGACGGCGACCGGUGCAGCAACGAUUAGUGCGGCGGCGGGAGGAUGACAUCGACGAGAACGAGAUGCACAUUUUUUUUCUUUUCUUUCUUUUUAUUUUUUUCCCUCACCUGUUAUAGCGUAUAUAAAGCGGCGAAUUAUUGAUCGUUGGCACCAUUUAUUUUUUUUAUAAUUCUUUAUACCAAUUCACCCAUUACAUAUGCAACAGAUUUUAACAAAAUUUGGCUGAUUGAAUAGUACUAUAACUACAAUUGAAUGGUACACUAAAAUUGCAAGGGGUAAUCUUACCAUACAAAAGAGGAGGUAACCAUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
41.06%
ME_num:
MEP:
55.89%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.91
Avg Expression:
9.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -7.01469801156368 | 8.8484223033519e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.54717271283374 | 0.0395264414195481 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.56491721846887 | 0.0205740216071256 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.7532539948407 | 0.0344980677754771 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.4453957389785 | 8.39008685196011e-05 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.79617092374905 | 0.0373995609481998 |
| 7 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -5.07540038937386 | 1.40190249572813e-09 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.65503995231572 | 0.0204514111888209 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.98122051825663 | 0.0115131780655434 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.73100910257407 | 0.00828164765485507 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.5085959280024 | 2.78202281943543e-05 |
| 12 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.27297189628608 | 0.032417881981126 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.0139503510891 | 0.0375526076204259 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.02221425919028 | 0.00378995450340263 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.99414197408508 | 0.0357412355765341 |