RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3173

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

24569482

End:

24572644

Strand:

+

Ref_name:

OSA-LNCN3173

Sequence
(OSA-LNCN3173.1):

GGCGUGCGCUCUCUCCCCUCCCACUCGACGGCGUCACGGCGACAGCGCUCCCGCGACGCGAGCCGGCAGGCCGGCCGCCGGCGCGACUCCGGCGCUCCUGCCCCCGCCACUCCUCCCGGCUGGCCGGCUCCUGCGGUCCCGCCAGGUGCACGCGCCCAGCCGUGGCGGCGGCGCCGCGCCGGCGCCCGCACGGACACGUCCUCUCUCCGUCCCGCCGCGCCUUCCGGCCAUCGCCUGGUGGCCUCCCGCAGGCCACAGUCCUGCUCCCGUCGUCCCGGCGUCCCGCUCCCGGCUCCCGCCCCGCCCGAGCCCGACGGUCGACGCUGCCAGCGGCUAGCACAGCAGCGCCCAGUCGGCAGCCGCCCAGGCCGGCCGGCGGCCGGCGCCACUCCAUCUCCGGCUCUUCGCCUCUCCGGACUCCGGUGAGCAAUUCCACAGUCCCUCUCCCCCUUCUAGAAUCUAGAGACUAGAGUUCUAGUAGUAAACCAACAGGCAGCACUAGUGUACUACCCCUUUAUAUAACAAUUUUGCAUUUUUUGAUGGUUCAUGGUUGUUAGGAGUCCAGGAGAUUGAGGCAUGGAGAAGUCAAGCAUUGCGUUGCUUUUUCAAAAGCAUGAAGCAAAAAAAAUGCUUGUGAACUUCUUGCAAAAAAAAAUUUACAUUUUGAUUUAGGCCUACCCUGGGUUCAAAUCCUGGGUCCGCCACUGUCUACUAACACAUAUCAUGGAGGUUACAUGGGAGAGGGAGGGCACACUAAAUUAACUAGGGAAAAAUAAUCGAACUCCUGAGAACAACGAGGAAAGGAGAAAAAGGAGAAAGAGUAAGUUACUAAGUGCCAAGAAGAUCUCCUAGGGAUUGGGCAACACCGCAACCCAAAGCUUCUCUUAUUGCACGAUGCGAUCAACCACCAUCUCCGUCGUGGAAAUAAUCCCCUCUAAGACAUGAGCAUUUUUUCUAGCCACAGGUGCCAAGGAGGACGAGGGAGUUGAACCCCUUUCUUGUGUGAUCCUACAGUUGCUGGCAAGAAGACUCCCACCAAACUGGAAGCAGAGCCUGUUGACAGGGUGAUAGCCUCUUGACAGGGUGAUAGGGAGGCUAACCUGGCCCGGUUGAACAGCAACUUGUGCUAAACUUGUGGUGCGAAGACACACUGCACCAAGAUAUGGUCACCUAGAUAUCUAUUGAUUAUCUCUAUACAAACAAAUCAUUAGUGUUUAUUAUUCCGAUGAUCAGACGGGCUAGAACAAUCAGCAAAAGAUAGGAUAUGUGCAUUCUUCUGGUGCAUAUAUAUGCUUUCGGGCCUGUAAGAUCACUAGCACUCUAUAUACCAUGUGCAUUUAAACUUAUAUACUCUGCGGCAAAAUUAAUUAUACUACUCUACUUUAGGGGUGUUUGCCUUAUCAAUAUAUAUUAAAGCAGAAAAGUAGUGAGAAUAUAGGGAGAUGAGCUUCUUUUUCAUAUGGACAAACUGAAUGGAAGAACUUUCUUUUCCUAGAGACAACUGAAUAGAAGAAACUUCAAGUGCACCGUUUGCACUCUCCACUAAUAAGAAUCUAAUCAUUAAAAAAGAACAAAAACGACAAUAUGCACUUGGUAGUGCUGUUUUUUUUAUCGCACAUCAGUUUGCAUGUUAAUUUCGUGACCAUAUUUUUACUUCCUCCGUUCUCAAAUAAAAGACGUUUCAAAAUGCAUACAUUCGAAUCUUGAAUCUUAAAUCACUACUAUAUAUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

73

LEP:

14.84%

ME_num:

94

MEP:

19.11%

HE_num:

324

HEP:

65.85%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root

Tau :

0.57

Avg Expression:

23.54

Tip: OSA-LNCN3173 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated1.495033944641590.0084913064487097
2IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h3.823174227906942.50089591978393e-06
3IR64 // panicle // Dawn--/--IR64 // panicle // Dusk3.412540004937649.59386240076157e-05
4Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated1.339875443526530.0315695651886952