Chr:
Chr2
Start:
24645231
End:
24651527
Strand:
-
Ref_name:
OSA-LNCN3172
Sequence
(OSA-LNCN3172.1):
CGUUCAUAUAGGCUAUAUUUGGCACUGAGAAGACGAAGAGACUCACCUGGUUGGGCUCAAUCCUACAUUCCAUCUAACCUCUGAAAAGCACGAGGUUUAAGCUUUUGGAAGAAGGGAUUCGUCAGUCGGUAGGAAAAGUACUAAAAUUGUCUGGGCCGCUGUGGGCCUCAUGCCUGGCUCUCUUUACCGGGCCUCGGCCUCUAUAUGGGCCUAACAGGUAGACACGUUCGCUCAUCUCAUUCGUCGCGGCCCCUCGCCUCUGAAUAUGGGCCUAAUAGGUACUCCGUAGGCACGUUCGCUCAUCUGAUCUCGCCGGUUCUCUGUAAAGUCAAAUGCUGUGCCUAAAGAAAAGAAAAACCAGGCACGGCGACUAUCUGUUUUGCCGUUUGUUUGAAGUUUGAACAGCUAAUAAACUACUACUCCCUCCGUCCUAAUAUAAAGGAUUUUAAGUUUUUGUUUGUACUAUUUGACCACUCGUUUUAUUCAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
24.39%
ME_num:
MEP:
69.92%
HE_num:
HEP:
5.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.72
Avg Expression:
6.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.42818922023273 | 6.33973738742485e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.14958869835311 | 4.02490762662227e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.24390477869989 | 2.95444053858653e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.80943585125647 | 0.00106459234659277 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.01368445260717 | 1.99196441204993e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.73909797402841 | 0.000452476853765415 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.48574822207627 | 2.67749840508346e-10 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -2.20974927468888 | 0.0149618248237261 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.2478641112419 | 0.0442633587879931 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.32364126108544 | 0.0141922097500602 |
| 11 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.14580401931978 | 0.0364787036165792 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.75027143875403 | 5.8093279306397e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.86064691778456 | 7.79029985321226e-06 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.81966865518615 | 0.014032492872387 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.14497713842833 | 0.03737958259164 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.38716194743662 | 0.0479846986068101 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.61095634320494 | 0.012119210290964 |
| 18 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.74358413165003 | 0.00291906791994657 |
| 19 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.97521986513842 | 0.00233861322531635 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.2069646358328 | 2.0367451173903e-06 |
| 21 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.12459276408516 | 0.0184002308911038 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.58348292934045 | 0.000103275673935251 |