Chr:
Chr2
Start:
24021694
End:
24022695
Strand:
.
Ref_name:
OSA-LNCN3153
Sequence
(OSA-LNCN3153.1):
GCCCAUUGUCGCGCUAUAUAAAGACAGCACCACCCUUCUUCACCACACUUCUCAGCUCUCACCACUCGCUACCCCCCUUUUCUUCUUCUUCCUCUAGCCACCACCAUGCGUGACGACUCAAGCGGCAGCAUCGUCCACCAUUGCUGCUGCUUCCUCCAUGGCCGCGCAAGCUUCCGGCCAUCAGCUGGUUCUUCCUCGCUUGCCUCCUUGGGGCGCCAUUGGAUCAGGAAGAGGAGGCUGAAGACUUGCAGCAAGCGGUGCGCCCUUAUGUGAUGGCCCUAUCCCCACCGAGCUUUUCUUCCACCGCCCCUCCUCUCGUUCUAUUCUCGGAUGCUUCUUGCAUUAGAGGCAUUCUUUUCGUUUCGAUGAAUGAUAGUUAAGCGGUGUCUUCUUGACCUUGCAAGACUUUUCAUCGAAAAACACUCUUCUUCACUUUUCUCGUAAUAUCCUUGCCAACAUUUCUCGUCCUCUCGCGUCUAUCACUCCUCCCAUCUUCUUUGUCCCCGUCUAUCCCUCUUGAGCUUGUGACUUGUGUGCUAAGGUACUUUAGAUGUACUACUUUUGUUAUUAUAGAUGGCUAUGUAGUGAGUUGGUCUAUGUUUCUGAUAUAUCUUUUGAGUUAUGAAUCAAUUAGUUGUAUGGUCGUCACUCGUCAGUAGUUCCUUGCGUGGUGAUUGAUCUCUCUCUAUAUAUAUAUGCUCCUUGUUUUAUUGAUCCUAACUAACAGGGAAAGAAGAUAUGCCAUGCUAGUAAGCAAAGGGCAACGCUUGUGGUGUUUAAUACCUUGUGCUUGUGAUAUGUCCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUUUAACCCUUGUUCCUGUGUAUUCACAGUGUGUACAUCAGUACAUGUUGGUGUUUCUGAUUCUCUCUUUAUUUUUUGUUGAUGCCGUCACGCGCUUGGACAGUUGGACGUGCAAAAUCUCUUGCUAUAUAUAUUAUGCUGUGUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
63.62%
ME_num:
MEP:
24.19%
HE_num:
HEP:
11.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.92
Avg Expression:
28.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.20845732147268 | 0.000711171964477309 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.16092539096078 | 0.000599259457448143 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.31458154625095 | 1.26130250847629e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.38583452701644 | 0.0485075966483945 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.94983684400446 | 2.23773174196933e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.7219636039129 | 0.00856378590560754 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.2051055920747 | 0.000376646673303958 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.49579895270522 | 0.0117752268933981 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.95826881063452 | 1.0163405165498e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.8100616812383 | 1.52281742458302e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.32987000595927 | 0.00037811327568277 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.35304385849392 | 5.53408865308646e-07 |