Chr:
Chr2
Start:
23848658
End:
23849104
Strand:
+
Ref_name:
OSA-LNCN3150
Sequence
(OSA-LNCN3150.1):
AGCGAUGUCAAGGAAGCCCCGCACGCCUCUCCCCCAUCUCCGACAACUCCCUUGCCACUAGAGACACCACUACCGCCCACCGCCAUCCUCCAUAAUCGUGGUUCCAGCGGUGCUAUCACCGUCUCGCCCUUCUACCACCGCCAAUCACUACCGGGUUGUCGCCGCUCUGGGCAUCGUCGUUGUCAAGCUCGCAAGAGUGGAAGGAGAAGGUCACGGUGCACGAAUCUCAGAGCCGAUCAGAGCAUCCAAAUUUUGAAAGAUGGGGUUUCGAUUAUGUCCAAUGGAGGUUAGAAAUUCUGAUACUAGUUUUCAUGCCAUUGAUUUUUUUUAUUGUUGAUCUACCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
97.36%
ME_num:
MEP:
2.24%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
0.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.24155894856052 | 0.0409965173059823 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.39364226346525 | 0.0327152910503897 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.49602303147697 | 0.0263731666489861 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.20397918909689 | 0.036727368441275 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.67522758148509 | 0.0193221980998216 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.80177959689898 | 0.0121435376824783 |