Chr:
Chr2
Start:
23524735
End:
23526149
Strand:
-
Ref_name:
OSA-LNCN3147
Sequence
(OSA-LNCN3147.1):
GUGCACUCCAAAAAACAGAUAACGUUGUUUGCCCGAACUGACGUUCGAACAUCUUUAAAAGAAAAAGAACUGUUCGAGUGUCGAACCAUGUAGUAUACGUGUACACGUUGAAUGUGCACUCGUGAUAAACCCUUUUUCGAACGGAGAGAAGUUGAUAAAAGCCUUUGCAGGAAUGGGCUGGCUGUGCAAGUCGAAAUUCCACCGAUCCUCUUUGGAUGGUUCACGUCGCAAGGAUCAUUUGAUUGGAAUGGGGUGCCGCGAAGCUAUACAUACGUGGCACACUACUACCUCCUCGUCAGUCUGAUGACAACGGCCAGCUCGAUCAUCUCGCGAGGCACGCGUCCGGCGGGCGGCGGCCGUCCGCUUUCUCGAGAAGCCCGACGAUACCCGUGACCUGUAUCGGAGCUAGAAGAUGAAAGUGCAGUUUGCUUAAUCUGACGCCGACAAGAUAAUACAUGGUCAGAUCAAGCACCGAUCAUUAUCAUUGUCUAAAGAAAAAGAAAAGAUCAAGCACCGAUGGUCGCGCAGAGGAGGCGUCCGAGCAGAAGGCGGGUCGGAGGCAUGAAGCCAAAAAGACGGCCGUGGUCCGUGGAUCGGUGGAUCGGCUUCACGGCGGCAGCGGAUUAGCGCAAGAUGCUGGCUGGAUGGUGGAAAGCGUCUCAAACUCUCAAGGAACAAGUAGCAGAGCGCUUCAGAAGCUCGGACGGCUGGAGAGCUGGAGAGAGAUCAUGCGGAAGUUCUGGCAAGCAGCAGAAGAGCGGGCCGUUUUGCACUCCACGCCAAUUUGGGUCGGAACGGCGUCCCCAAGUACCUGUUGGGCCCAAACAGAACUCCCACGUGAGUGGUCCAUAUUUUACUGGGCCUUAAGGCCUGCAGUGUGUGGACGUGGUGGGUAGUGGGCCUUACGUACUGGACCUCCAAUGAGAUGCUGCAAGUAGGGAAUAAGUCUAUUUUCUCUCCUUCAUUUCUUCCUAUUGAAUGAACCGCAUCCCUCAACCGCAAAACCGACAAUAACGCCUCCCCCAUCUUUCAAAACCAGCACAAAUCAACUCCUUCGAUAUUUUAGGAUGUGAUUUCUGCUAAUAUGGUAGGUUGACCACAGUUGACACGUUGAGUCAGCAAGUGGAGCCCACCUACCAUGGACUAUUUUCUUUCUUGUGUGGGUAAACCAAGAAGGUGGGGGCAAGCGUGGGGUGCACCUGUCGGCCUUUGCAUAUGCUCCUUUUCUUAUACUCUCUUCUUUCUCUCCUCGUCACUCAUCUUCUUCCUCACUCCUCUCGAACAUUGCUGAGUGACA
Sequence
(OSA-LNCN3147.2):
GUGCACUCCAAAAAACAGAUAACGUUGUUUGCCCGAACUGACGUUCGAACAUCUUUAAAAGAAAAAGAACUGUUCGAGUGUCGAACCAUGUAGUAUACGUGUACACGUUGAAUGUGCACUCGUGAUAAACCCUUUUUCGAACGGAGAGAAGUUGAUAAAAGCCUUUGCAGGAAUGGGCUGGCUGUGCAAGUCGAAAUUCCACCGAUCCUCUUUGGAUGGUUCACGUCGCAAGGAUCAUUUGAUUGGAAUGGGGUGCCGCGAAGCUAUACAUACGUGGCACACUACUACCUCCUCGUCAGUCUGAUGACAACGGCCAGCUCGAUCAUCUCGCGAGGCACGCGUCCGGCGGGCGGCGGCCGUCCGCUUUCUCGAGAAGCCCGACGAUACCCGUGACCUGUAUCGGAGCUGUAUCUUCGAGAAGAUGAAAGUGCAGUUUGCUUAAUCUGACGCCGACAAGAUAAUACAUGGUCAGAUCAAGCACCGAUCAUUAUCAUUGUCUAAAGAAAAAGAAAAGAUCAAGCACCGAUGGUCGCGCAGAGGAGGCGUCCGAGCAGAAGGCGGGUCGGAGGCAUGAAGCCAAAAAGACGGCCGUGGUCCGUGGAUCGGUGGAUCGGCUUCACGGCGGCAGCGGAUUAGCGCAAGAUGCUGGCUGGAUGGUGGAAAGCGUCUCAAACUCUCAAGGAACAAGUAGCAGAGCGCUUCAGAAGCUCGGACGGCUGGAGAGCUGGAGAGAGAUCAUGCGGAAGUUCUGGCAAGCAGCAGAAGAGCGGGCCGUUUUGCACUCCACGCCAAUUUGGGUCGGAACGGCGUCCCCAAGUACCUGUUGGGCCCAAACAGAACUCCCACGUGAGUGGUCCAUAUUUUACUGGGCCUUAAGGCCUGCAGUGUGUGGACGUGGUGGGUAGUGGGCCUUACGUACUGGACCUCCAAUGAGAUGCUGCAAGUAGGGAAUAAGUCUAUUUUCUCUCCUUCAUUUCUUCCUAUUGAAUGAACCGCAUCCCUCAACCGCAAAACCGACAAUAACGCCUCCCCCAUCUUUCAAAACCAGCACAAAUCAACUCCUUCGAUAUUUUAGGAUGUGAUUUCUGCUAAUAUGGUAGGUUGACCACAGUUGACACGUUGAGUCAGCAAGUGGAGCCCACCUACCAUGGACUAUUUUCUUUCUUGUGUGGGUAAACCAAGAAGGUGGGGGCAAGCGUGGGGUGCACCUGUCGGCCUUUGCAUAUGCUCCUUUUCUUAUACUCUCUUCUUUCUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.67%
ME_num:
MEP:
7.32%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.92
Avg Expression:
1.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.76658553704527 | 1.32793998204811e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.31290419279649 | 6.87132187641949e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.15937077586262 | 6.62530144360255e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.77348646051962 | 0.00239892531431276 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.12275051040231 | 0.0408147809395235 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.22114002304886 | 0.0115171273912408 |