Chr:
Chr2
Start:
23114820
End:
23115573
Strand:
+
Ref_name:
OSA-LNCN3138
Sequence
(OSA-LNCN3138.1):
CAUUUUCGUAGCUAAAAACAAGUAUUUUCAGUUAUAACAGCAUUCUGUUAUGCAAACUUCAUUAACUUGAAAAGUACCUAAAAAUGUUGUCUUUUCUCCAUCCAUUGAGCAGGUAUGAUAUCCAUCACUAGGACAUGAAGGUUUCCUCUUUUCUUUUCUUCUUUUUUCUUUUUUACAGGAACCAGGACAAGAAGGUUAACUCCAACGACUACAAGGGAUCUCAUUCCCUUCCUCUUGCAACUCUGAAAGGGCCAACGAAAUUCUAAACUAAGCCUCUGACCUGCUUGGGCAUAUUCCAGAUAAUUAGAAUCGAACAGUGUACAUUUCUCUCUUGUAAAACUCAUAUUGUUCGAGAAAAAUUGGCUGCACAUUUACUGGAGGAUUAUCCCAAGCAUCGGUAGUAUUUAUUUGAUUCCGUGGACGGCAAAGUCAGGUCCUCCAUUAAAAAAGAUCAAAAAGGCAGAAAUUUCCGUGGACUUUCUGCUGAAGGAUGAAAAAAAAGGCACCUUUGUAGGAAAAAAAAGAGGAGAGAUCUCUUGUGAAAAAAAUGAAGCAAGAAAAGGAGAAAGGGACAGAGGAGAGCCUCUGAACGAAGAAGUGAACUCGUUGGUGAGCCGAGGAGUGAGAUGGUCGCCCACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.71%
ME_num:
MEP:
17.89%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.91
Avg Expression:
2.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.15097515683777 | 4.28552737016032e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.03908403209104 | 1.53114318772461e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.08425527508557 | 2.67419830976835e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.78544617819177 | 0.000245624461087476 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.23911158855224 | 0.000165192381763087 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.22661147021704 | 0.000202365208293815 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.25060459940231 | 0.018992472463165 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.51752573486159 | 4.18129841631438e-09 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.03937312923996 | 0.000151826555330221 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.71699616128684 | 8.87153043956812e-09 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.46927938247503 | 3.84970298414411e-10 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.54854159701117 | 0.0487588644479151 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.83252505953852 | 4.91991075642807e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.09682552434016 | 7.12859033039035e-12 |