Chr:
Chr2
Start:
23060926
End:
23069725
Strand:
+
Ref_name:
OSA-LNCN3136
Sequence
(OSA-LNCN3136.1):
GCACAGGAGCUCCCAAUCAUGGCAGCAGCGCCUUCCUCGACGGACCGUACAUAUUUUUUUUAUUUUUUUAGAGAAGUUAUUUUUUACCAAACCUAUAUAUCCAAUCGGAUAUAUACAACAUUUUUAAAUUAGAAACUUAUCCUAUAAAACAUAGAACUUAGCCAUCAAAUAAUCCACUCUGAAUUUCGCUCCUAUGAAGAUUUGAACUCAGGACCUCAUGUCGCUGCAACCACUAAAUUAUAUGCCCAUUCACGCGGCCGUACAUGUGCCGGACUGUUCGGCCGCAUGUACGUACGCCUCGCGUGUAUAGCAUAGCACAUUACCAAUAUACUACUACGUACGUUCAGGGUACAGUGUCCGCGGCCUGCGCGCCAUCUCUCGAUCGGUGUCCCGGAGCAGUCGCCGUCUUGCCGGCCGGCCGGCUGGCCGACCAGCGAUAUGCCGAUCUCGAUUCUUCCCGGCCUGCCGGUGUCCGUACACCAAUCGAGCUCCCUCCUCCGCUACGCGCGUGGCCAAGCAACCACCGUCCGCCGCGCGCGGCCCACGCGCCCUGGUGGGCGCCGGUGACGGUGAAUGCGUGUACGUGCCGAAACUUCGAAGUUAGCUCGAUCGCCGGCUGGGCAGCCAUGGUCUCACCAACCAUGGACCGAAUCGCCUACACAAUAUAUGUGCCGCUCACACAGUUUCAUUUCCUGCACGAGUGUCAAAGAAGUACGGCGAUCGAGCGCUGCCAAAAAUAAUGCCACAGUUUCAUUUAGCUGGAAAGAGGGGCAUGCAUGCUUGCAGGCAGGAGGAGCAGGCUCUGGCCGGCCGGCCGCGCAAUCAUGGAGCUAGCCGAACCAUCUAUUGUUGAGUUGUGCUCCAAAUUUAUUUAUACAUAAUAAAGGUCAGCUUCUGUGGGAGCGAAGCGGAGGCCCAUCACCGGAGGCUUGGGCCGGAGCGAAACAUAGGCUGAAGUGGAACCCCCGCGGGACCAGGCAACGUGCGAUGCUGCUGCUGCCUGCCAGCACGGAACAACAAAAAUUAAGCGCGUAGGAUCGCAUCGCAUUCGCUCGCAUACAGGGGAGGUGAGUAGAAAAAUGAGCCAAAUUUGCAGCGUGUUCGUUUGUCAAUCUGGCUGAGGUGGACGCCCCCGACAGGAACAGCCUGUUCCCACCAUAAAGAAAUGCCGCGUUCACAGGUCGCUUAACGGCUCGCAUACAGGGAGUACUAUUUCGUUAGCAAACUAGCAAAGUCUAGUGGUGAUGGAUUACCGGAUUACCCAACUGAAACUGCCAGCCUGAUGCUGCUCAUUGCCAAGGAUGAGAGGACAACUGGAGAAGGCCGAACAAUAGUAGUAGUGCUGCUGCGAGCUCAGCUCUUGCCAACCUGCAACUGCCACCAACAUGUCAGUAAAUGUCUCAGCUGCUUUACCUAUUAUUGGGCUCAAAUUGAAAGGGAAAUAUCCUGCGUGUUCUUUUGACUCAAAACGUGUUACUACUACAGCAAAUGCAUCAAAGGGUAAACGAAUUAGGAACACAGGGGGACACUGUCAACAGUUACAAGGAGAUGAACAUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
80.28%
ME_num:
MEP:
19.11%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.91
Avg Expression:
2.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.21897055768393 | 2.20698926181149e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.44758500215065 | 0.0143723189469076 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.41442107026984 | 2.5195091185805e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.82084704879089 | 0.000193984252219934 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.44639052397721 | 0.0018723883837042 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.45944139309718 | 0.00851812316718696 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 4.0268784192149 | 0.0444118441738946 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.54538615912389 | 0.000610857955793694 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.21252011114271 | 0.0126726543164513 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.10536633083936 | 0.00283752530826289 |