Chr:
Chr2
Start:
22898078
End:
22899348
Strand:
-
Ref_name:
OSA-LNCN3133
Sequence
(OSA-LNCN3133.1):
CUCUGUUCCUCCGAAUGUCGUUUCAUGGUGAGGCAUAGUGCUUAACUGAAGCACUGCGAACCGCAUGCCUGUUAGCACAAUUCAUAAUCAUCACGAAACUUGUGGAUGUGGGUAUGUUUAAUUAGGAACUACUUGCUUCGUUUUAAUCAUUUUAGCAUUGCCAAAAACGGAAAGACAAUAUAUAGAAACAGAGGAAGUAGCUGGUAUCAAAAACAAUAUAUAGAGGUUCAGAAGAACAAAUGAAGAAAAGAGUUGGCAUCUUGGGCCAUACUCCAGUGCAACAGCACCCAAUUCAACUGUCGUUGGGUUAGAUUUGUCCAGCUGGCACCUAUAGAGAAACAAAAUAACAAAAGAGGCAAGGUGUGGUUUAGAGAAAUAACAAAAAGAGUUGGUAGUGGGGGUUUAAGUGGGCGAACCCAUGCACCACGAAGAAGGCUUUGCAGCAGGGUGGCGAAGCGUAGGCUCAUCUCGUGCAUCGGACAGAGACUCUGUCCUUUGCCAUGAGUCCCGGGGGGGAACCCCGGCUCCGUGGAAAUCCAAAGCUGCACAACUAUCGGGCCUGGGCUUGAGGUAGAGAGCCCCAACCCAAUUAACCCGCCAGCCUAUACAGGCCGACCAGCCUGGACCAAAUACGCCAAGUCCCCUACUCCGAAAGCCCCAAUCUCCUCUACCGGCUCGACGCACCGACCUAACACCGACCCAACUCCAGCUGGCUGGUAAAUUUCUCUCGCGGGGGGCCUUCUCUCUUGGCCCGCGACCCCAUCAGUGAGUGAGUACCCAUUUUCUCUUAUGGGCCUCUUUUUCAACGACCGGCCUGCAACACAGCAGGUGACCUCGGUCCAACAAGAGCGCGAGCGCCCCCACGCCUUUUCUUCCCAUGCAACUAUCUGACGGCGGCGGCCUGGCGACUUCCCCCCUUCCAGGGCACGCCGGCGCGCGUCCGAUUUAGGGAGGGAGAGUUUCGUUUCGGCGACCUCGACCCCGGCGAUUUGCCAUGGGCUCGAGCCCACAAACCCCAACAACCAACUCUUUAGCCCUCCGAAAGCUGGAGUAACAGGCACGCGCGACCGAGCCCGGCUGGUGGAGAUGGUGGGAAGCGCGUAUUUAAGCUGGUCUUGGCGUCGUUCGGCAAGCGGGAAACAUCCGAGAUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
40.04%
HE_num:
HEP:
59.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.95
Avg Expression:
3080.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.00151300838357 | 0.0081821801120418 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.35162258810644 | 0.000462783275444251 |
| 3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.17333569978617 | 0.00851937181771083 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.96077347216435 | 1.56790621293735e-05 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.54271784278478 | 0.0225248976306643 |