Chr:
Chr2
Start:
22525966
End:
22526945
Strand:
.
Ref_name:
OSA-LNCN3128
Sequence
(OSA-LNCN3128.1):
UCACUAGCGAAAAUUGGACGGCGUAUAAGGAGCACCGAUUGAAAAAAAAGUCGCUAUAUUAAAAAAUCACCCAUCUCACCCCUCCUAAAACUUCAUCUCCUCUUCCCCAAUCUCACCCCCUCCCCAACCCCCACACCCUCAGCCUCUCCUCUUCAUCUCAACAGCGACGGCGACUCAAGGGGUGCGGGCGGUGGACCUGGCCAUCGGAGUGCUACGGGUAGCUAACCCAACCGCGGGAGGGGCGUGGGCGGUAGACCUGGCCACCGGAGUGUCACGGAUGGUGGAUUCAGCCGUGGGAGGGGCACGGGCAACGGAUCCGUGGCCGGGAGGUGGGCAGCAGCGGUGACGGUGGAGGGGACGAAUCCAGUGGUGAGCGAUGCUUGAGAUUGCUAGAUACGCCUCCUCGACAGUGAAGAAGUGGGGCGGUUGCGGUGGAUCUGGCGAAGGUUGCCACGACGAUGAUGACGACAGCUGGUCCUUGAGAAGGUUUCGGCGGCUCCUCCACCCACUCCUCUCUCCUAGAUCCAGUAGGCGGCAGCUCAGGGCCAUGGCGGUGGAUCCGGAGGCCUGGGGUGGUGAGGUCACCAUAGGCGGUUAAGCUCGGUCGUGGGAGGUGGGCGGCGGAUCCUGUGAUGGCUCAGUGCACGGGCGGUGCAUCUGGUGGCGAAGCUCAGGCGUGGGCGGCGGAUUUAGGGAGCUCCAGAUCCUUUGGGUGGCGGCGGUGCUCGGUCUUCGUCUCGGUGAUGGCGACGAUUACCGGGAGCGACAACGAUCCACCGGUUAGUUCGUUUGGAGAUGGGGACUGAUCCAAUUGAAAACCCGUGAAUAGAAAUUUGUGAUUGUAAAUUGUGAUGAUUUAUGGAUUUGUUAACUUUGGGAAUAAUAUAUGUGGAAUUUUUUUAACUUUGAGGAUAACUUAUGUGGAUUUUGGCAUUGAUGAGCGGAUUCUUUUUUGGUGCUGAUGGUUGUGGAACGAGUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.53%
ME_num:
MEP:
49.8%
HE_num:
HEP:
29.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.71
Avg Expression:
10.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.40653679573139 | 0.0213727186327112 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.30436692661856 | 0.00600010173667053 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.19656330176503 | 4.05023798275355e-07 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.5758684357419 | 0.0399271369933963 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.57597908201421 | 0.04015051755427 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.57604715684312 | 0.0400060816593994 |