Chr:
Chr2
Start:
22514092
End:
22515896
Strand:
+
Ref_name:
OSA-LNCN3127
Sequence
(OSA-LNCN3127.1):
CGGAAAUCCUAUAUACUUAUAUAGUUUAUUAUAUUCUUAUAUAAUUUAUCUCCACUAAGUAUAGUUAAUGUUAUUUCUCUCUUUUCUAAUUAAGCCACAUCACCCCAAUUAUUUUUAGCCUUUGAAAGAUGGAUCUAUGGACCAAAUUGUCUCUUCUUAUUUCUCUCUUAAAAACAUGCAAUCUCAAUUACUUUUAGACUCAAAAUUAUAUCAAAUUGUUUUCAGUUUUAUACAUAUUAUGCAACUUAAUUUUUCGCAGCAACGUGUCGGGUAUUCAUCUAGUUGGGAUAACUGAUGUCACGACGGACCAAAAGGUGAGUGAGUAUGGAAUAAUCUUUAAGUGACUAACUCUCACUACUGCACAAACCGUAAUAGCUAGGUGCUAAUUGAAAAUCCACUAGUGCCAGAGUUUUCAGCCGACACCUUUCAAGCUUAGGAAUCAGCACCUUCAAAGUUCCAGAAAUAUCUCUAAUAUUAUAAAAGUUGAAGAUGUUUUCGCUGGCACUUUGGUACGUCAUCCGGUGUGCGAGUCGGUUUUUAAGUUUAUUCGCUUUUAGAAAUACAGAUCCGUAUUUGAGUCGGAUUUUAAGUUUGUUCGCUUUCGGAAAUACAGAAGGAGUCGUAUAAGAAAUAUUUUUUUAAAAAAAACUCGAAUACUAACUUGAGAUGAUCAUACUCCUAAUUAUAGCUCAUGAUUUUUACCUUAACGAAACCAUAUAACAAUAAUAAAAUCAAAAUAGUCUUCACCCGUUGCAACACACAAGCAUUUUUUCGCAUUUUUUCUAGUAUAAAAAAAAGUUGGCUCGAUUCUGAGCUGAUGCAUCGAGCCACUCCCUAUCACACCUAGACCAUCCUACAUCCACAUACCACAAUCAAUCAAUCCAACAAUAUCCCCCAAAUAACACAACACAAAUCACUAUCGAUCCAUCAAACAACAACAUCCCCCGCACAAAUCACACAACACAAGUCAUAAAAAUCCACUCACAAAUUUUGGCACUCCAAUUAGAAGUGCCCCACUCUCCGCGUUGGAGUAACCUACGCUCACUGUCGUGUUGGCUGGAUCUUGUGGCUGCCGCGUCUGGUAGGGGAAAGAAAGAGGCUGUCGCCGCCGCGCGGGAAAGAGGAAGAGGCUCAUGGUGGCUGGAUCUGGUCACCCCCGAGCUCGUGGUAGCCGGAUCCGGUGGCCGCCGCACAGAGGAAAGGAAGAGGUCACCACCGUGGCGCCAGGGAGAGGAAGAGGCACUGCUACAGCGUGGUGCCGAGGAGAGGAAUAGGCGGCCACUGCCGUUCCGCUAACUCCGUGGUAGGGAGAAGAAGAGGUAGUCGCCAUGAAAAGGCGGCUGCCGCCAUGCUAGGAGACGGGAUCGAGAUGGAGAAUGAUGGGGAGUGACGUAGGGGAUAAGGGCGUUGUGGGAGGAUAAGGACGCCCACUCCACGCUAUGAUCCAAUGGGCUAUGGCGCCCUAAAUAGCCAAUAGUAUACUUGAUCUAGCAGAUCUUGCAGUUGAUCAUGAGAUAGCACCCUGAGAGUCUUUUGUAUGGUAGACAAAGAUCAGGGCCGUGUCUAGGAAUUUGAGCCCCCGUCAAAACAUAAAUUUGAAGCCUGGUGGCGUUCUACUAAGUCAAGGUUGGGAAAAAGAAAUAUGUCUAGAUAUAGGUCCCGUUCGUUUUUUCUGUAAGGCUAGGAUAAAGAUUUGGAUUCUCGUGACACGCUUAUCAAACUGCUAAACGGGGUGUUUCGUGUAAAAACUUUCUAUAUGAAAGUUGCUCUAAAAUAUCAGAUUAAUCUAUUUUUUAAAUUUAUAA
Sequence
(OSA-LNCN3127.2):
GCUCAUGAUUUUUACCUUAACGAAACCAUAUAACAAUAAUAAAAUCAAAAUAGUCUUCACCCGUUGCAACACACAAGCAUUUUUUCGCAUUUUUUCUAGUAUAAAAAAAAGUUGGCUCGAUUCUGAGCUGAUGCAUCGAGCCACUCCCUAUCACACCUAGACCAUCCUACAUCCACAUACCACAAUCAAUCAAUCCAACAAUAUCCCCCAAAUAACACAACACAAAUCACUAUCGAUCCAUCAAACAACAACAUCCCCCGCACAAAUCACACAACACAAGUCAUAAAAAUCCACUCACAAAUUUUGGCACUCCAAUUAGAAGUGCCCCACUCUCCGCGUUGGAGUAACCUACGCUCACUGUCGUGUUGGCUGGAUCUUGUGGCUGCCGCGUCUGGUAGGGGAAAGAAAGAGGCUGUCGCCGCCGCGCGGGAAAGAGGAAGAGGAAAGGAAGAGGUCACCACCGUGGCGCCAGGGAGAGGAAGAGGCACUGCUACAGCGUGGUGCCGAGGAGAGGAAUAGGCGGCCACUGCCGUUCCGCUAACUCCGUGGUAGGGAGAAGAAGAGGUAGUCGCCAUGAAAAGGCGGCUGCCGCCAUGCUAGGAGACGGGAUCGAGAUGGAGAAUGAUGGGGAGUGACGUAGGGGAUAAGGGCGUUGUGGGAGGAUAAGGACGCCCACUCCACGCUAUGAUCCAAUGGGCUAUGGCGCCCUAAAUAGCCAAUAGUAUACUUGAUCUAGCAGAUCUUGCAGUUGAUCAUGAGAUAGCACCCUGAGAGUCUUUUGUAUGGUAGACAAAGAUCAGGGCCGUGUCUAGGAAUUUGAGCCCCCGUCAAAACAUAAAUUUGAAGCCUGGUGGCGUUCUACUAAGUCAAGGUUGGGAAAAAGAAAUAUGUCUAGAUAUAGGUCCCGUUCGUUUUUUCUGUAAGGCUAGGAUAAAGAUUUGGAUUCUCGUGACACGCUUAUCAAACUGCUAAACGGGGUGUUUCGUGUAAAAACUUUCUAUAUGAAAGUUGCUCUAAAAUAUCAGAUUAAUCUAUUUUUUAAAUUUAUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
37.6%
ME_num:
MEP:
44.51%
HE_num:
HEP:
17.68%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.82
Avg Expression:
17.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.312800460057 | 3.15786236366649e-41 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.39389167277654 | 1.79478469321037e-54 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.43967370133805 | 1.35992599926872e-57 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.14843722645146 | 1.26679930186108e-35 |
| 5 | Azucena // root // control--/--Azucena // root // Al | -1.18345672756097 | 0.000381523108023939 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.83294415317975 | 1.04133475158989e-12 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.13536193659707 | 1.22183438197364e-15 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.00485258792664 | 1.15421743291237e-09 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.48378651416716 | 8.05426159303349e-07 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.21937841959123 | 0.00131199114026612 |
| 11 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -7.33520660778634 | 0.00568865548719506 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.49122924508961 | 2.94392036522559e-07 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.05314613360623 | 3.41427489482229e-45 |
| 14 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.40026333040762 | 0.0210836973991116 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.3571382983168 | 0.00216548033569754 |
| 16 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.93698955248936 | 3.2279126981534e-14 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.5029716422133 | 3.48379359396467e-09 |