RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3117

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

21674021

End:

21676366

Strand:

+

Ref_name:

OSA-LNCN3117

Sequence
(OSA-LNCN3117.1):

CCACAUGUCGGUAGCAUCUCCUACCUCCAGCCGCCGGCCAUUCCGAGCCCGAGCCGCCCCUCUUCCGCCUCCGAAUCCGCCUCAAUCCGACCCCGUUUCUUCCGGAUUUUUGAGGGGUUUUUAUCCUCUCGUUCUCCUCUAUCUUUCCCCUCAAGAAUCGGAGCAAAUCGUUGGGUAUUUUAUCCGAAUCAAACUCGUUUUCGAGUUUAUCUCUAAAACCGAGUUUUUGAUUUCCCGAAGCGAUUUCUUGCGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCACCUCGUCGCCCUCUUUCGUUUGCCCCAACUCCCGUCCUCUCCCGUGCUCCGUAGCGCCGCCGCCGCGCGCGCCUAGUUCGUCGCCGCCGCCGGCCGAAGUGCAGCCGCGCCGCCGCACCGUCUUCGCCGUCGCCGCCGCUUGCCGUCGCCGCCCGUAGGUGCGCCAAGGGGUGGAGAAGCCCGGCCGCCUGUCCCCCUUCACCGCCGGCCACCGGAGCUCCGCCGUCGCCGCCGACCGAGCCGCCGCCGCCGUCCACCUCGUCGCCGGCCAUCAUCGUUCGUCGUUUGGCUCGAGGUUUCCGACGUUCCGGAGGAGAGCGUUUCCGUUGAGGAAGGUUCCGAAGCGUUUGCGGAAGCCCAAGAAGACGAGUAUCUCAGUGAAGGUGAUGAUCUGGAGGAUUAGGCUUGUUCUUGGUUAAGAUGCCUGUGGAGUGGAGUCGCCAUAGCUGUUCCGUAGUUUGUUAUAGUUUUAUUUCCGCUGCGUAGAGUGUUAUUCUUUGAGAGGAACUAUCUACCUCUGUAAACUUUUAUUAUUUGCGAAUAUUAAAUAGUUAUCUAUUUGUACUCUAUUAUCAAAUUGUCAUUGUGUGCCUCGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

311

LEP:

63.21%

ME_num:

178

MEP:

36.18%

HE_num:

2

HEP:

0.41%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

endosprem

Tau :

0.87

Avg Expression:

2.33

Tip: OSA-LNCN3117 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.315104779602770.0477051837037832
2Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-3.119807463885178.21616190487473e-05
3Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day2.276056224585090.0189431381142681