Chr:
Chr2
Start:
21487371
End:
21501471
Strand:
-
Ref_name:
OSA-LNCN3114
Sequence
(OSA-LNCN3114.1):
UUCUCAAGGAACAGAUGGCUGAAACAAAGACCAAGUUUUAUCCAUUAUAAAAAAAAAGGCCCACUGAAUGACCACUAUAAAAUAUACUUCAGUUUUAUCAGAAAUUCCAACAUUCCAUUUUGCAACCUAAUUGUUCUUCCUGAUCUUACUUUUGAAGGAUAACAUUCUAUAUUCAACUUCAGGAAUAUGCAUUUCCUCAAGCAUCUACCAGGGAAUUUGUCUCUUUUAACAUUUUGCAAUACAAAUCUAGCUAGCUGUAUAGCCCUUUUGAGACACAGACAACUACUGAUGGAGUGGUGAUGGGAAUGUGGAUCUAGUUGUCUGCUGUGGACAUGUGGGCGUGCAAGCUUCUUCUAGGACUAACUUUACUUACAGUGUGGCUAGCCAGUAGCCACUUGACCUUGCUCAACCUGAUCUGGCAUUUUCACUAUCCCCAACAGCGGAAUUCAUAUUUCUGAGCUUGUAGAAAGAAACAGGGAUAGAGCAGAAUUAACAGUUACUAAAAACUGCUUCGAUUCAGCCCCUUCUCAUCAUUCCUGUCCCAAUUUUACAUGUAUCCAAUUGCGGUUUCCAUUUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.48%
ME_num:
MEP:
77.24%
HE_num:
HEP:
5.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.86
Avg Expression:
11.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.14345433468402 | 0.00872614800195925 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.71215284606141 | 0.00543679709254594 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.51775201428904 | 0.00918400560237505 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.4158342371964 | 0.00509071835840832 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.39547362794605 | 0.00121836011831565 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.63429749782157 | 0.000335077422419606 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.21331988675999 | 0.00400518717084297 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.64216329814783 | 0.000599898590753541 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.27142642308638 | 8.88981621554321e-08 |