Chr:
Chr2
Start:
21374469
End:
21376282
Strand:
-
Ref_name:
OSA-LNCN3113
Sequence
(OSA-LNCN3113.1):
CCUAAAGAUCAAGCAGAAAAACACCGAUUUAACAACCAAUCUAUUAGCUUGAAGAAUCACUUAAUCCAAGAUGCUAAACAGGGGGACAAAAGGAUCCAAAAUUUAGCGUUUACUGCACAUCACAUAUAACCAUAAAACUAAUAAACUUCUAGUGGAGGCUGGAAAUACGAACAAAAAGAUUUCAAGGAUUAGAGCUACAGAUAAAUCAAAAUCCGAUUGACAAGCAAUUUGUGGGGGGUCACCAUAUGAGAUCAAAUGUUGCAUUUGGUAUUUGGUAAGAUCAUCAGACCACACGGAUACCGACGAAGCAACAGCCAACCAAGAGAUGAUAUCCCCACAGAUGAUUAACAAGAAUAAAAAAACUCAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.02%
ME_num:
MEP:
10.57%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.85
Avg Expression:
1.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.86534173243296 | 9.56646534394859e-06 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.41883500996744 | 0.00299808375593443 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.81037284336585 | 0.0269103385313718 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.02771573363906 | 0.00020115093667299 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.87458087384694 | 0.0160360651603479 |