Chr:
Chr2
Start:
20809451
End:
20809975
Strand:
.
Ref_name:
OSA-LNCN3101
Sequence
(OSA-LNCN3101.1):
CCCUUUCCUCUUCCUCCUCCCAUCCCGGCCUUCUCCUCCCCCUCCUCCCCUCCCAUCCGACUCCUCCCUUCCCAUCCGAUCUCUCCUCAGAUCCAUCUCCCUCUCCUCCUCCUCCCCUUCCUCCUCCCAUCCCGGCCCUCUCCUCCCCCUCCUCCCCUUCUUCCUCCCAUCCCGGCAAGGGCCGCCUCCUCCCUUCCCGUGCCCAGCAGGACCGCACGCGGCAGGCAGCCGGCGGGGCCGCACGCAGCAGGCGCCGCGCAAGGCCGAGUAGCGAGCGGCGGCAGGUGGCGCUACCGGCAUCCAUUAUUUCUUUUCUAUUUUUUUACAAUUUGUGAUUCACUGAGAUGUAUAAUUUUGUGAUUUGUUGUAUGGAUCUGAGAUGUAUAAUAUGUGAUGUAUUUGAUUUGUGUGUAAUUUUUUUUUUAAGAUUUGUGAUGUAUUUGAUUUGUGUGUACAAGUAACUUAAGAUUUGUGAUGUGAAUAUUUUGGGAUGUUAUUUUGAUUUGGGGUUUGAUUUGGAUAUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
85.57%
ME_num:
MEP:
9.35%
HE_num:
HEP:
4.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.95
Avg Expression:
5.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.2553927831624 | 0.00166140835876326 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.02809560751613 | 0.0416810481285746 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.31647859278158 | 0.0100410450648019 |