Chr:
Chr2
Start:
20657016
End:
20658896
Strand:
-
Ref_name:
OSA-LNCN3098
Sequence
(OSA-LNCN3098.1):
GCAGUCGGGAUAGGCCGGCACGGGCCUGACCCCAUCAGGUCGUGCCGUGUUUGGGCCGGGCCAAAAUGUCGCGCCAUGGGCCGGGCCGUCGGGCCUCAGGCCUUAUGGCCAUCUAUAGGUCUAUAUGAAAAGGUUUUCGCUAGCAUGAGAGUCAACUUAGUAAUUAAGUUUUAUGGUUGUGAGCCUAAUUAAUCGUGACAUGUGAAUCAACAAGACGUGCAUGAUAAGGGUUUGAACUAGGAAAACCACAACCACUUCAAACAAAACCAGAACAACAUAUGCUUCAGGGGUUUAACCUAAUUUUGAAACUUGGGGAGCGGAAAACAUUCGGUUUUGUAGGUCAGGGUGAAAAUUGGACUUUGAGCAAAGUCUAAGGGAAAAAAUGUUUUGUGUCAUUAAUGUGGAAACCAAGGUUCAUAUCAUUCUCACAUGUAAUGACAUUUUACAAUUUGCAUAUAUUCAUCAUGGAACUUUCCUAAUUUUUAGUACUUAACACUAUGAACAUUUUCAACAUUGUGAGAAACCUUCAGCAUGCCUAUAUUGGUUGUGAUUGGUACUAGUCCUGGUUUAGGUUAUUAUUACUUGGUUGCUCCCUACUAGAAGCUUGAGCACCUUCUGAAUGUUUUGAAACUUAAAAGGUGUAGUUUAGUAUCAAGGUGCUUGAAAUCAAAGAAAAACAUAAUAUAUCCUCAUAGUAUCAAGGUGCUUGAAAUCAAAGAAAAACAUCCGUACUUAUUUUGGGGACGGUUACUAAACCACUUCAGAAUCUUAUAUCAUACAAAUCAAAUGCUAAUUGUUGAGGACAAUCCGCAUUUCCCAUACAAUUUAGCAGAGCUAGAAUAAAGGAUAAAUGAAAAUAUGACAUGUGCUUCUAAUAAUAAAAACAUAAUUGUCUUUCUUAUAAAGCUACACCGAUUAAUUUACACCAUCAUAAUCUAGAUCACGAUGUUAAAAAAUAAACCCUUCUUCCUUCAAUGGUUAAUGUGAUAAUUUCUACACCUUUGGAGCGAUUGUGGUAUCUAGCAUGGUUUUGAUACUAUAAUAUAUUAUGUACAAUUCAUUUGUUGUUAUAAUGUGAUAACCUCUUAUAUUUCUGCUCGAUCCACGUUAUUCUUCUCUGUAAAAAACCUUAUUUUUUCUGAAAAUAAAAAACUAAUCUUAUUUUUCUCUAAUAAAAAUAAGUGACCAAGAAUAGAAUGGUGUACAAACACUAAUAGAUCAGAGGAAUCUAGAUCAUAUUUUAAAUGCCUCUAUUUUAUAAUCUAAACAUUAUAUACUAUUAAUCCUUAAACUUUGGCCACUUAGUUUUGAUAAUAGAUUAUAAAUAAUAUAAAAUGUCAUAUUAUCGAAGUGCAUUGUAUCAUCGUAUAACAAGAGAGUACUAGUAACAUUUUGCUCAUCGCAUUUUAAUCAUAUAAAAAUCAGUGGUACUCAAAGUUAAAACAGUAAAUCAGGAUAGUCAAUACUCCAUGGGUAUGUUAGAAGUGCCAUUUAUAUUUGAGCAGCUUUUAUACCCGGUUAGACGACGCAAAAUGGACUUUUUUUUUUCCAAAAUGAGAGAACAUGGCAAAAGAAAAUCCAUAAAUACCCAUGCUACUGCAGCUCAGUGUACUGAAUGGGCUCCUACAGUCCUAACUGUGUAGCCCGUUCAUCGGCCCGUUAAUGAUUUUCCAAGAUAACAGUGAAAACUGAAGGAAAAAGUCCAAUUUGACUCCCUUAAUUGUACGCCGAAUCUAAUUCGUACCCCAUAACCAGAAAACCGGAUAGGACAAAUCCCCGAACUAAUGAAACCAGUGCAAUUUGACUCCCUCAGCGGUUUUGGAGAGCGGUUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.64%
ME_num:
MEP:
46.95%
HE_num:
HEP:
50.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.66
Avg Expression:
12.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.08427528393355 | 0.00333928120291528 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.02112909301199 | 0.0155797708859029 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.06258693430498 | 3.00074640974622e-05 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.143449770585 | 4.61094203933017e-06 |
| 5 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 3.35490427701618 | 0.00587438142905418 |
| 6 | 9311 // leaf // control--/--9311 // leaf // salt | 1.05607384888984 | 0.00283436689735908 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.34821921383022 | 1.71343718770442e-06 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.18548065911939 | 6.94510588800559e-09 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.03393476039226 | 0.000445986984586903 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.27380889482839 | 7.01745719487702e-15 |