Chr:
Chr2
Start:
19455014
End:
19458450
Strand:
-
Ref_name:
OSA-LNCN3069
Sequence
(OSA-LNCN3069.1):
CAAAAGGGCAAGCAACGGUAGCAAGCACGCAUUAUCUCUCUAGUCAUAUCGCCAGUUCCCCACUCCCCUAUGUCCCUUUCUCCACUCCCAAAUCGCAUUUCUUGAGCUUCCCAGCAACACAGCACAACUAUGGCCAGGAGAUAGGAUAUCUUCUUCUUCCUCUUCCUCUUCCUCUUCCUCCUCCUCCUCUCCUGCUCCUGCAUCCUCUCCCGCGCGCUUCCCUGCUGCUCAGGUGAUUUAUUGCAACGGAAUAUGUGGUGGGGAUACGUGGCAGCAUGAGGACUCUGCGCGCGUGAGAGAGACGUGGGCGGCACAACAGGCAGCGUGUGAGCCCCGGCAGCAGCAGCGAUGCGUCCGAUAUUUGGCUUCCCACCGGACGGGCGAUUAGAAGCAUUUUUUUGAGAGAUCCAGAAAGAUAUACUUGCGAGUUGCGAGACAGUACAUCAGAUCGCUGUGCACAGCAUGUCUUUUAUCUCGUUGCUCCACGUAUAAUUAAAUUACAGUGCCAUUUGAAGCAAUAGAAUGCUGGCAGAAUGGCCAGCUUGAGAUUAGUAGAUUCUGUAAUUAUUUUUUUGAGUAAAUUACAUCUUGGGCCACUCUUUUUUACCAAUGUUGCAAUUUGGACUAGGGGUGAACAAACUUGUUCACUUUAGACUACCUAUCUUCACUGGUUGUUUUAGUUUGGACUGUUUCUUCUACCUCUAUAGCUCCCCCUCUCUCCUCUCUUUCUCUCUCCACUCAUGGGCAGGAAGAACCACCACUACAAAGUGAGCCACUCGCCAGUGCCGUGCUUGCACGGGAGCUCCGCCGGCACCAGCUUCAACGCCAUGUGCUUGAAAUGGCCUCCGCACCCUGGUUGCACUUGACAGAAAUAAAGAAGAAAAUGGCAAAAGAAAUUCCCCAUUACCAUGUGGAGGUAUAGCUCGAGCUCAACUACCGCGCCGUGAAUUUAUACUAGGUAAUAAGGCGCGCUUUGCGCGCCCUACCAUCAGGCAAACAACAUAAAAAAGCAGAGAAGUUAUGAUGACAGGAAACGCACGGGCUACAACCUAGUUAUCGCAACAAAUUAAAAUGCCAAUGCCAUGCAUGCGACAUAAUAAGAAAUGAGGAGAUGGACUCA
Sequence
(OSA-LNCN3069.2):
CAAAAGGGCAAGCAACGGUAGCAAGCACGCAUUAUCUCUCUAGUCAUAUCGCCAGUUCCCCACUCCCCUAUGUCCCUUUCUCCACUCCCAAAUCGCAUUUCUUGAGCUUCCCAGCAACACAGCACAACUAUGGCCAGGAGAUAGGAUAUCUUCUUCUUCCUCUUCCUCUUCCUCUUCCUCCUCCUCCUCUCCUGCUCCUGCAUCCUCUCCCGCGCGCUUCCCUGCUGCUCAGUAUCUGCUGAGUCAGCCUUGGCCACACACCAUAGUUGCUGCCCGGAAAGACCUGGGGCAGUGGGUGGAGUUGUGGUGAGAGCAGGAGGUGGCAUGCUGAUAGCAGGCGUCAUUGGGUUUGAUGUUGGGUUUGUCAAUGAUGCAGAAGGAGGAGAGGUUGAAGUCGUCGGCAGCGGGUAUGCCGCAGGUGCAGGUGAGGUGGAAGGAUUCACCAUUGAGGGGGCAGUAAUGGGUGUAGGGAGAGGAUUCAAGG
Sequence
(OSA-LNCN3069.3):
CAAAAGGGCAAGCAACGGUAGCAAGCACGCAUUAUCUCUCUAGUCAUAUCGCCAGUUCCCCACUCCCCUAUGUCCCUUUCUCCACUCCCAAAUCGCAUUUCUUGAGCUUCCCAGCAACACAGCACAACUAUGGCCAGGAGAUAGGAUAUCUUCUUCUUCCUCUUCCUCUUCCUCUUCCUCCUCCUCCUCUCCUGCUCCUGCAUCCUCUCCCGCGCGCUUCCCUGCUGCUCAGGCAACUAAUCCAACGAUGCCAAUCACAGUCCCAUCUACAAACCCAGCACCAAUAAUCAUCACUGUUCCUUCCAAAAACCCUACCAUCACAAUUCCUUUUCAGAGUUGAAAUGAUUUUCACCUUGAUGGUAACGACAUUGACGAUGCCAAAACACAGCUUCCUGAGCCUGCAAAGGAAAUAUACACACAUAAAAUGAUCUUUACAACACAAACAUAAUGACAUUGAAAUGAGAGGAGAUUCAUCCUUACUGGGAUUCACAUUGACAAGCAUUGUCGUCCCCCAAAAAUCGCAGCUGGAGGGUGCAGGGCUCCUCUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.7%
ME_num:
MEP:
43.5%
HE_num:
HEP:
37.6%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.92
Avg Expression:
126.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.17845797283322 | 0.0102663021421148 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.79300959754506 | 0.0419474685623928 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.19957255067082 | 0.00509295553969577 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.51267126824292 | 0.0019380183669028 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.22859500564666 | 0.00198349890187005 |