Chr:
Chr2
Start:
19308805
End:
19313134
Strand:
-
Ref_name:
OSA-LNCN3068
Sequence
(OSA-LNCN3068.1):
CCCAACCUCAGCGCCAGGUGGGCUGGCGCUGAGUUUCCCACAGUCAGCGCCAUUAUGGAUGGCGCUGAGGUCCCAGCCCGCAAGCCAUCCAGAAGGCUCGAAACGGCCAAGGCCCACCUCAGCGCCAGGUGGACUGGCGCUGAGUUUCCCACAGUUAGCGCCAUUAUGGCUAGCGCUGAGGUCCUAGCCCGCAAGCCAUCCAGAAGGCUUGCUGGGCUGGGCCAAGGCCGAAACGGCCAAGUCCCACCUCAGCGCCAGGUGGGCUGGCGCUGAGUGUCCCACGGUCAGCGCCAUUAUGGCUGGCGCUGAGGUCCCAGCCCGCAAGCCAUCCAGAAGGCUUGCUGGUCUGGGCCUUAGGGGUUGCGGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.24%
ME_num:
MEP:
43.7%
HE_num:
HEP:
53.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.78
Avg Expression:
53.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.31085152564438 | 0.000141066878316337 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 2.48602159775891 | 0.00331217441383318 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.38813828308556 | 1.53636030188683e-15 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.60746497184197 | 0.000308567007670336 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.94548996742296 | 1.67429240857973e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.1568836414545 | 1.71219826579165e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.96508510956652 | 4.24062905545387e-64 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.85897704447092 | 2.18526096951977e-132 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.33894808261034 | 1.0311314549763e-05 |
| 10 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 2.42818566035086 | 0.000226107378672784 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.97915510907898 | 0.000649520749575638 |
| 12 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.454696674932 | 0.0357991270390835 |
| 13 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.86021278880544 | 7.60960616997413e-69 |
| 14 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.99743613626027 | 0.0128037378936361 |
| 15 | Nipponbare // coleoptile // wild_type_plus_1hr_shade--/--Nipponbare // coleoptile // wild_type_plus_1hr_white_light | 4.09997403599201 | 1.2736172270413e-05 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.6242748934779 | 2.69234239132759e-106 |
| 17 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.46453191161987 | 2.42485542184166e-167 |
| 18 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.11679581988518 | 2.40473326233014e-06 |
| 19 | 9311 // leaf // control--/--9311 // leaf // salt | -1.39001289037141 | 0.0338511706946001 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.40390115180591 | 3.47316035286951e-06 |
| 21 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 3.16379053486278 | 7.42016967135798e-26 |
| 22 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 3.16370537729554 | 8.83403226636375e-26 |
| 23 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 3.16362917809977 | 7.78002675678547e-26 |
| 24 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.03297442316289 | 0.0393784988704112 |
| 25 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.07884710455666 | 5.58927666481855e-07 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.60155024794324 | 1.45615748559723e-09 |
| 27 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.71091433237822 | 4.85680576011349e-05 |
| 28 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.05798502441448 | 0.0397183820709599 |
| 29 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.28804916686279 | 8.18533634729491e-09 |
| 30 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 2.05411784017345 | 6.51223095968232e-21 |