Chr:
Chr2
Start:
19305165
End:
19306364
Strand:
-
Ref_name:
OSA-LNCN3067
Sequence
(OSA-LNCN3067.1):
UAUGCUAUGGCCGAAUAAAACGGAAAGGCACCUGAUGCGAUUCAGUAGCAACUUGCGGCCAAAUAAUAGCCGACCUGAAGUAGAUCAGACAUGGGGACUAGGGCUUUGGACCUGAGCUAUCUUGACCAUCUUUGAUACAGCAAAGAUCGUAGUUGUUUGGCGCAUUGGUACUGAGGUUUUUGGAUACUUUUUCGCUUCCGGAGAGAUCAGACAAUUCCUCCCUCGGCGGAAAAGUUCCAGCGUGCAGAGAAUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.68%
ME_num:
MEP:
6.1%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.53693214968295 | 0.0470336505385734 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 7.40672410729978 | 0.000114858891939193 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 7.26520672505116 | 5.18104755565754e-05 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 7.26512414997354 | 5.24553483697575e-05 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 7.26501863840323 | 5.20020238010626e-05 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.5982785030307 | 0.0420816252983862 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.6240215540738 | 0.0198743985933077 |