Chr:
Chr2
Start:
19293735
End:
19304736
Strand:
+
Ref_name:
OSA-LNCN3066
Sequence
(OSA-LNCN3066.1):
GCGUGACCAAAAUGCCUAACCAAACCAAUCAACCCCAACAAACCUUCGGCAACCAACCUGCGAGCUUAUCCGGCCCGGCUAAUGGCCAAAUGAGUCAGGUCAGGUGCUCACGGUCGAUCUGGCCGACGAAUAGUCGGAUAUGCCGCGUAACCUCGAUUGAUUUAGUUCAUCUCCGGCGUGCGGCAAGGUGGCGCGGCAGGCGGCGGCGGUGGCGGUAGGCCCACAUGGCGCAAGAUGCGUGGCUGGUGAUGGCGAGACCGACGCGGCGCGAGCGUGAGGACGUGCGUAGGAGGCCGGCGAGGGUGGCCGUGUGGCGGCACAUAGAGGUUGGCCAACGGGGGACGCCAGUACAGCAAGGCCUACGUGCCGACGGAGGUCAGACGGUGGUGGAGCAAUGGUGUCUCACUGUGUAUUAGCAGGCGACAAGCGGCGGGUGAAAACAUAGCCCGGUUUUGGCUAGGCCGAUAAUGUUGGCGUUUCCGAGCGUCGCUUCCCCUCUUGAGGGCAUUGUGUGCUGUCUCAUCCCCUCUAUCGGGGCUGUCGGGUGAAAACUCGGUCUCGGUUCUCUUUGGGACCUCGACGGACGGCGGCGCCGCCGCUUUCGUCGCUUCUUUCCCAGGAGGUAUCGUCUAGGCAGUCUCUUGCCAAAACCUCCAAAACAAUGGAUACAAGCUCGCUCUAGACUAAGUCCUCUUGUGUCGGUGUCCUAAUUUAUGCAGGUUGGCCACGUUGGAUGGUCUAGGUGGAGAGCGGUUCCAUUCUUCUCUCUCACCAUUUCUCCCUCAACUCCAAAGAUGUGGAUAGAGUGGAGUUUGGUAUCGAUUGAGUUUUGGGCGAUCCCAGCUGUAGUUCCUUUGUUGGUCUAACGACGAUUGGCCACGCUUAGUGGCGGCCAAUCCGAUGGUAGCUUUCUCCUGGGUUUAUGUAUUGAUAUUGUCGGUACGUGGGUGGUGGCUAUUUUUCUUUGUUUUCCUAGUUACGACCUGUCAACUUUUUUUUAUGCUCUAUCAAUAUGAACUUCACACGGUCCGAAGCGAGUUUGUAAUCAUGUAGUAUUUUUUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.22%
ME_num:
MEP:
26.83%
HE_num:
HEP:
71.75%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.72
Avg Expression:
32.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.28350881937456 | 0.00802265311392716 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.96215504187255 | 0.0214024141674061 |
| 3 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 2.02190577935071 | 0.0292019111043679 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.31306603770751 | 0.000718002966811254 |
| 5 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.09359790071257 | 7.91390310397788e-05 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.37785030839452 | 7.83813832620973e-16 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.24053242113562 | 0.0337393283781124 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.85908181284835 | 1.47492210410816e-05 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.90699709993418 | 0.0458189242823342 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.81331690043725 | 3.24167207809274e-14 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.81320841306529 | 3.07636246926992e-14 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.81312236218378 | 3.30184769087185e-14 |
| 13 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.37889323170123 | 0.0443535716667991 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.69907806847514 | 4.99250296590242e-07 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.17333886012507 | 4.45437648208288e-05 |