Chr:
Chr2
Start:
18533220
End:
18534194
Strand:
-
Ref_name:
OSA-LNCN3042
Sequence
(OSA-LNCN3042.1):
AACUCUUAACUCUGACUCACCACCAGCACAGCAGAUUGAUCCAACAAGGGGGUGUUUCGCCAAGACGCCAAGCUAGCAAGGUAUAGGUAGCUUCCUGGGCUCCUGUCCUGUGGUGUGCCAGUGCCAGGUCGAUGCGCGCUCGUGUCUGUCGCCUCCUGGCGUCGCAUUGACUUUGGAUAAAUGGAUUAUGGAUGGAUGCCAUCGCAAAAAGCAAGGACACUAGUAAAAGGAUGGCCUUUUCUUUAGGGAGAGGAGAGAAGGUAAGAGAUGGCUUUUGAUUCUGACUGUUCGGUGGUGAGUUGGUCGAUAUCGAUCUAGACAUUUGAUCUAGAAGACACAGGGGAGGAUCACGUGACGUGGCGGAUGUACGAGGAAGAAUAUUCUCUGGUGGUUGGACAGGCAGGAGUGCUGGUUUUGCCAAGAGCUUUGAUGCUGAUGGAGUGAUGAGAUGGAUAUACCGAUAGAGUGGUUGCUGCGUCGGUUCCACGUCACUUCAAUUCGUCUGCAUCACGGCCUCAAAUACCUGCCACCGAGCGACCUUCUCUACUCGCCAGUAGUUCUUUUUGUUUCUUCCUCUCAUGUUUUCCUCAAGCACUCACAAGUUACAACCUGCGUAUGGAAGUGUUUAGUUCCCUUCAAACAUCCAAAAAUUUCAUCAUAUCAAAUAUUUAGACAUAUGCAUGAAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.7%
ME_num:
MEP:
4.88%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
1.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | 9311 // leaf // control--/--9311 // leaf // salt | 3.40551734388211 | 3.44112443892192e-05 |
2 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.78443642941082 | 0.000505668387280598 |