Chr:
Chr2
Start:
17302293
End:
17305555
Strand:
+
Ref_name:
OSA-LNCN3026
Sequence
(OSA-LNCN3026.1):
AUUUAACUUGAAAUAUUAGCACAAUAUUAAUCUUAUCUUAAGCUCUUGAGGUUUAAUAGAGCAAUAGUUAUUUCUAAUUAUGCAUGCAUACAAAAUUAUCCUAUGAUGGCUUCACUGAGCAUUGAUUUAAAGAACUAUAUACAGAUAUAAUCCUUAACUCAAAUGCACUUGUAGAUCAUCAGAGAUAAUUCUUGCUGUUAACUAUGUAAUGAGAUAGCUGAUCUAUACUUGAAUUAUUCUUUUUAAGAAUCCACUAAAUUUAAGAUGAUACUAUAUUGUCCAAUUACUUAUAAAAACUAUGUCUUGAGCGCAUAUGAUGUACUAUGAUUUAAGUGCAGGUUUUGGUCUUCCUCAAAAAGCUAGAAUGCUUAAGCUUAAUUCCACAAAGAUGUAUAUGCAGUCACACACUCCUACACAUACUAGUAUAUGCUCAGAUUAAAAUACUUAUGCCUUGCCUAUCUCACUUAUGAGUCUUUCUUGAUCCCAGGUCUAUAUGCACAUGAUGCUCUCCAAAUAGAUAAACAGCAAUUGUUCUAUUAUUAAAUCAUGAAUGGCCUUGUUUAUAUCUAAUGAAGGCAGAUGCAUACCUAUAACUUCUAAUCAUACUAGAGCAUGCACAGAUCAAAGUAGAUGCCAUGUUUUAAUUUAAUUUUUCUUGAUUUAUCUACUCAACAAUCUUACCUUCAACUGUAUUCUGAUUUUGGUGAUGAUAUUUCCUGGCCUACUGAAUCCUCUUGAGCUUCCCUCAAUUAAUCUUCCUUUUUGUUAAUUAAUUUCUUUGCUAGUCCUAAUUCUUGGCAUCCUGCUGGAACUGCUACAGGUUGCUACUCCUCCUAGAGUUUGUUUGGCACCUUUUUGAGAUGAAAUCCCUUGCUUCCUCCUGAGCUUGAGCUGAAACCCCUUGCUCCACUUGUAAAUCAGGUGCCGACGAGUACGACGCGGGCCGGCUCCGGCGAGGAGGCGGCAGGUACCGGCGAAGGGGCGGCGGCGAUGCUCCUGUGUCGGGGAGGCGGCUCCCGUGGGCAUCGGCAUCCUCACCGGCGGGAAGCCCACGGCGGCGGCGGCACGACGCUCUCACCGGCGGAAUCCCGCAAGGAGGCGGGCGGUGGUGUCAAAGCGACCGGCACAAGUCAGUGGCGGCGUUUUCGGUGGCGGCACGGAGGAGACGAUGAGGCGGCGCGGGCUCCUGGGCUCGGUGGCUGGCGGAGGAGCGGCGGCAGAAACGGCGCUAGGCGCUGGGCGGUGGCGCGCUCGAGCCGGCAACGAGUGAGGAGCGAGGAGCGAGAGCAGGGAGGGAAGGGGAUCGUUCUGAUCUGUUUCCUGGUUUUCCUGUUGACUGGUUUUUUUUUCUUCUUGACCCAAAACGAUUCGAUUUUGCUAUAUAUUUGUCGACAAAUUGUAACAUCCCGGGUUUUAGCUAUAGUCUUAGUCAUGCUAAUGACUUGGUCACACUGGCUGAGAGCGGUGUUGAUUGAGCCACGAUGCUGGCUAGGACCUAUAAAUAUGUUGAUUGUUGUUCUAUUAUGGAUCUUAAAUGAUUUUUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
77.44%
ME_num:
MEP:
21.14%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.91
Avg Expression:
4.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.29281728351592 | 0.00246546438515779 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.39878878015117 | 0.00138996728732311 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.54596033852295 | 0.000970662380803377 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.52462755267798 | 0.0220952994684446 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.78308527043184 | 0.00799507153887688 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.95093683467225 | 0.00590413115981984 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.65969472565685 | 0.000658108092005341 |
| 8 | 9311 // leaf // control--/--9311 // leaf // salt | -1.06042798915736 | 0.0436359554092712 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.36082328850984 | 0.0011896388096919 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.83958406625292 | 0.000395248870844003 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.24730066027463 | 0.00265958779854702 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.98378794046577 | 0.000175644495288492 |